# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l5aA 436 1.43e-01 c.43.1.2 75923 c.43.1.2 75924 1i19A 561 1.92e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1bgp 309 3.55e+00 1bgp a.93.1.1 18690 8pchA 220 4.74e+00 1cs8A 1h2aL 567 7.05e+00 1h2rL e.18.1.1 43299 1dmuA 299 7.22e+00 1dmuA c.52.1.4 33294 1oe4A 247 7.28e+00 8acn 754 7.49e+00 1amj c.8.2.1 30724 c.83.1.1 35400 1a15A 67 7.62e+00 1a15A d.9.1.1 37451 1amj 754 7.82e+00 1amj c.8.2.1 30725 c.83.1.1 35401 1gskA 513 8.75e+00 1lnsA 763 9.13e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1azo 232 1.04e+01 1azo c.52.1.14 33329 1el6A 219 1.15e+01 1el6B d.182.1.1 42606 1el6B 219 1.17e+01 1el6B d.182.1.1 42607 1g4uS 383 1.20e+01 1g4uS a.24.11.1 16643 c.45.1.2 32691 1keiA 316 1.25e+01 d.92.1.2 77349 1b0jA 754 1.29e+01 1amj c.8.2.1 30719 c.83.1.1 35395 1gqeA 365 1.30e+01 e.38.1.1 70351 1qg7A 67 1.34e+01 1a15A d.9.1.1 37449 1gnlA 544 1.42e+01 e.26.1.1 70287 2tmnE 316 1.46e+01 1hyt d.92.1.2 59055 7acn 754 1.49e+01 1amj c.8.2.1 30717 c.83.1.1 35393 6tmnE 316 1.49e+01 1hyt d.92.1.2 59071 1c96A 753 1.49e+01 1amj c.8.2.1 30727 c.83.1.1 35403 8tlnE 316 1.49e+01 1hyt d.92.1.2 59075 1hyt 316 1.49e+01 1hyt d.92.1.2 59005 1g4wR 383 1.54e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 6acn 754 1.56e+01 1amj c.8.2.1 30721 c.83.1.1 35397 1e3dB 542 1.58e+01 1h2rL e.18.1.1 59189 1fljA 260 1.69e+01 2cba b.74.1.1 27954 1eaxA 241 1.73e+01 b.47.1.2 64889 1cxqA 162 1.79e+01 1cxqA c.55.3.2 33621 1f5mB 180 1.82e+01 1f5mB d.110.2.1 40896 1f5mA 180 1.83e+01 1f5mB d.110.2.1 40895 1jvpP 298 1.86e+01 d.144.1.1 67371 1h3gA 601 1.90e+01 1mkiA 330 1.93e+01 1vsd 152 2.05e+01 1cxqA c.55.3.2 33625 1gwuA 309 2.21e+01 1ayx 492 2.24e+01 1ayx a.102.1.1 18825 1gk8A 475 2.28e+01 c.1.14.1 65234 d.58.9.1 65235 1k6iA 352 2.37e+01 c.2.1.2 68223 1gsoA 431 2.37e+01 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 2atjA 308 2.38e+01 1bgp a.93.1.1 18675 1k94A 165 2.40e+01 a.39.1.8 68333 7atjA 308 2.43e+01 1bgp a.93.1.1 18673 1ubkL 534 2.46e+01 1hcl 298 2.49e+01 1hcl d.144.1.1 41593 1k6xA 352 2.52e+01 c.2.1.2 68238 1o7fA 469 2.57e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1m1nB 522 2.60e+01 c.92.2.3 78418 1l1lA 739 2.66e+01 c.7.1.4 73470 1mwsA 646 2.67e+01 d.17.4.5 79592 d.175.1.1 79593 e.3.1.1 79594 1parA 53 2.71e+01 1bazA a.43.1.1 17437 1asu 162 2.71e+01 1cxqA c.55.3.2 33626 1bk1 184 2.72e+01 1axkA b.29.1.11 24340 1uc8A 280 2.72e+01 1l8fA 207 2.73e+01 1f4qA 165 2.82e+01 1alvA a.39.1.8 17360 1jhnA 424 2.91e+01 b.29.1.12 70060 b.104.1.1 66722 1gz8A 299 2.94e+01 1fzvA 132 2.94e+01 1vpfA g.17.1.1 60159 1bxvA 91 2.96e+01 1aac b.6.1.1 22875 2minB 522 3.08e+01 1qguB c.92.2.3 35610 3minB 522 3.17e+01 1qguB c.92.2.3 35606 1bdtA 53 3.24e+01 1bazA a.43.1.1 17433 1jkgA 140 3.26e+01 d.17.4.2 66795 1e1xA 299 3.29e+01 1hcl d.144.1.1 59157 1h2rL 534 3.38e+01 1h2rL e.18.1.1 43298 1ayyA 151 3.58e+01 1apyA d.153.1.5 42016 1mwxA 646 3.74e+01 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1suh 146 3.90e+01 1edhA b.1.6.1 22206