# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jk0B	345	2.72e-01		a.25.1.2	63143
1fgyA	127	3.43e+00	1faoA	b.55.1.1	26976
1mr7A	209	4.35e+00			
1kk6A	209	5.67e+00		b.81.1.3	68657
1jb2A	127	8.64e+00		d.17.4.2	71624
1ldjB	90	1.06e+01		g.44.1.1	73850
4ubpB	126	1.08e+01	1ubpB	b.85.3.1	28345
1ubpB	122	1.28e+01	1ubpB	b.85.3.1	28346
7ahlA	293	1.50e+01	7ahlA	f.6.1.1	43812
7icd	416	1.59e+01	1iso	c.77.1.1	35072
1a4kA	217	1.73e+01	8fabA	b.1.1.1	20236
				b.1.1.2	21248
1mxiA	160	2.18e+01		c.116.1.1	79646
1wjbA	55	2.27e+01	1wjcA	a.4.10.1	16265
1o54A	277	2.27e+01			
1k87A	669	2.35e+01		a.176.1.1	77286
				c.1.23.2	77287
1iso	416	2.40e+01	1iso	c.77.1.1	35065
1lvl	458	2.40e+01	1lvl	c.3.1.5	30567
				c.3.1.5	30568
				d.87.1.1	40205
1dkzA	219	2.53e+01	1dkzA	e.20.1.1	43314
1dkxA	219	2.63e+01	1dkzA	e.20.1.1	43315
1g6oA	330	2.81e+01	1g6oA	c.37.1.11	32430
1pb1A	416	2.94e+01			
1jm4B	118	3.22e+01		a.29.2.1	71746
1b5fA	239	3.25e+01	1smrA	b.50.1.2	26836
1gy6A	127	3.28e+01		d.17.4.2	70736
1flcB	175	3.41e+01	1flcB	h.3.1.1	45716
1bd2D	204	3.42e+01	1tcrA	b.1.1.1	20622
				b.1.1.2	21557
1kxoA	184	3.44e+01			
1f4qA	165	3.65e+01	1alvA	a.39.1.8	17360
1jn5B	250	3.79e+01		d.17.4.2	66922
1g3p	217	3.86e+01	1g3p	b.37.1.1	24788
				b.37.1.1	24789
1obpA	159	3.89e+01	1obpA	b.60.1.1	27092