# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1octC 156 5.99e-02 1au7A a.4.1.1 15991 a.35.1.1 17017 1e3oC 160 1.21e-01 1au7A a.4.1.1 59197 a.35.1.1 59198 1au7A 146 3.74e-01 1au7A a.4.1.1 15995 a.35.1.1 17021 1cydA 244 1.16e+00 1cydA c.2.1.2 29825 1d0iA 156 1.98e+00 2dhqA c.23.13.1 31383 1pou 71 2.48e+00 1au7A a.35.1.1 17020 1phk 298 2.89e+00 1cdkA d.144.1.1 41635 1gtzA 156 3.78e+00 1b8wA 42 4.44e+00 1b8wA g.9.1.1 44593 1g9pA 45 4.90e+00 g.3.6.2 65171 1e0cA 271 6.15e+00 1e0cA c.46.1.2 32717 c.46.1.2 32718 1jipA 403 6.36e+00 a.104.1.1 66748 1oxa 403 6.44e+00 1f4tA a.104.1.1 18965 1eupA 403 6.66e+00 1rom a.104.1.1 18967 1jf2A 195 7.21e+00 1ej3A a.39.1.5 62930 1iqcA 308 7.48e+00 a.3.1.5 66266 a.3.1.5 66267 1sesA 421 8.69e+00 1sesA a.2.7.1 15710 d.104.1.1 40710 1fvaA 217 8.85e+00 1fvaA d.58.28.1 39409 1ipaA 274 9.59e+00 1jjiA 311 9.60e+00 c.69.1.2 66766 1el4A 195 9.71e+00 1ej3A a.39.1.5 59453 1a7j 290 9.84e+00 1a7j c.37.1.6 31952 1qfcA 306 1.09e+01 1uteA d.159.1.1 42077 1tif 78 1.18e+01 1tif d.15.8.1 37836 1ew0A 130 1.21e+01 1drmA d.110.3.2 40905 1gn0A 108 1.28e+01 c.46.1.3 65358 1d06A 130 1.40e+01 1drmA d.110.3.2 40906 1d5yA 292 1.41e+01 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1fqjC 42 1.42e+01 1fqjC j.51.1.1 46332 1qddA 144 1.49e+01 1qddA d.169.1.1 42324 16vpA 366 1.56e+01 16vpA d.180.1.1 42601 1e3dB 542 1.56e+01 1h2rL e.18.1.1 59189 1rh2F 165 1.58e+01 1rh2F a.26.1.3 16898 1gg4A 452 1.65e+01 1gg4A c.98.1.1 58985 c.59.1.1 33957 c.72.2.1 58986 2bc2A 227 1.67e+01 1a7tA d.157.1.1 42031 1aym3 238 1.72e+01 1aym3 1iioA 84 1.76e+01 a.39.4.1 66150 1lit 144 1.91e+01 1qddA d.169.1.1 42325 1f6bA 198 1.92e+01 c.37.1.8 64986 1bed 181 1.98e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1e6yC 247 1.98e+01 1mroC d.58.31.1 39441 1pysA 350 1.98e+01 1pysA d.104.1.1 40775 1qgjA 300 2.00e+01 1bgp a.93.1.1 18691 1cczA 171 2.16e+01 1cczA b.1.1.1 19758 b.1.1.3 21683 1g55A 343 2.26e+01 1g55A c.66.1.10 34247 1qcrF 103 2.45e+01 1be3F f.2.1.8 43676 1edg 380 2.46e+01 1edg c.1.8.3 28807 1fzrA 138 2.82e+01 1fzrA c.52.1.17 33336 1keaA 221 2.92e+01 a.96.1.2 68491 1cl4A 60 3.00e+01 1cl4A g.40.1.1 45171 1egdA 396 3.18e+01 3mdeA a.29.3.1 16596 e.6.1.1 42857 1k3eA 156 3.26e+01 d.198.1.1 68103 1drmA 131 3.28e+01 1drmA d.110.3.2 40908 1i50C 318 3.31e+01 d.74.3.1 61756 d.181.1.1 61757 2nadA 393 3.33e+01 2nadA c.2.1.4 30090 c.23.12.1 31350 1hlrA 907 3.36e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 2nacA 393 3.44e+01 2nadA c.2.1.4 30088 c.23.12.1 31348 1qceA 123 3.45e+01 1qbzC h.3.2.1 45750 1sra 151 3.52e+01 1sra a.39.1.3 17190 1g5aA 628 3.54e+01 b.71.1.1 65152 c.1.8.1 65153 1g84A 105 3.73e+01 1g84A b.1.1.2 60345 1jwwA 80 3.84e+01 1ihrA 76 3.92e+01 1ihrA d.191.1.1 62392 1amp 291 3.96e+01 1amp c.56.5.4 33837 1hzmA 154 3.98e+01 c.46.1.1 65975