# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1octC 156 2.65e-02 1au7A a.4.1.1 15991 a.35.1.1 17017 1e3oC 160 7.40e-02 1au7A a.4.1.1 59197 a.35.1.1 59198 1au7A 146 2.03e-01 1au7A a.4.1.1 15995 a.35.1.1 17021 1cydA 244 2.96e-01 1cydA c.2.1.2 29825 1pou 71 4.56e-01 1au7A a.35.1.1 17020 1eupA 403 3.45e+00 1rom a.104.1.1 18967 1oxa 403 3.60e+00 1f4tA a.104.1.1 18965 1jipA 403 3.78e+00 a.104.1.1 66748 1fvaA 217 3.85e+00 1fvaA d.58.28.1 39409 1d0iA 156 4.53e+00 2dhqA c.23.13.1 31383 1jf2A 195 4.91e+00 1ej3A a.39.1.5 62930 1hlrA 907 4.98e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1rh2F 165 5.21e+00 1rh2F a.26.1.3 16898 1d5yA 292 5.47e+00 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1g9pA 45 5.92e+00 g.3.6.2 65171 1ipaA 274 6.79e+00 1e0cA 271 7.03e+00 1e0cA c.46.1.2 32717 c.46.1.2 32718 1gtzA 156 7.07e+00 1phk 298 7.16e+00 1cdkA d.144.1.1 41635 1iqcA 308 7.76e+00 a.3.1.5 66266 a.3.1.5 66267 1b8wA 42 8.02e+00 1b8wA g.9.1.1 44593 1aym3 238 8.76e+00 1aym3 1bed 181 9.97e+00 1fvkA a.44.1.1 17514 c.47.1.4 32808 1tif 78 1.07e+01 1tif d.15.8.1 37836 1k4wA 252 1.11e+01 1cr1A 296 1.13e+01 1cr1A c.37.1.11 32286 1jjiA 311 1.15e+01 c.69.1.2 66766 1el4A 195 1.23e+01 1ej3A a.39.1.5 59453 1cr0A 296 1.27e+01 1cr1A c.37.1.11 32287 1fqjC 42 1.31e+01 1fqjC j.51.1.1 46332 1a73A 163 1.80e+01 1a73A d.4.1.3 37145 1b33N 67 1.81e+01 1b33N d.30.1.1 38459 1g84A 105 1.85e+01 1g84A b.1.1.2 60345 1iioA 84 1.98e+01 a.39.4.1 66150 1hueA 90 2.03e+01 1huuA a.55.1.1 17900 1e6yA 569 2.06e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 1qfcA 306 2.09e+01 1uteA d.159.1.1 42077 1qddA 144 2.16e+01 1qddA d.169.1.1 42324 1qceA 123 2.19e+01 1qbzC h.3.2.1 45750 1iw7C 1119 2.40e+01 1sra 151 2.44e+01 1sra a.39.1.3 17190 1a7j 290 2.45e+01 1a7j c.37.1.6 31952 1ew0A 130 2.54e+01 1drmA d.110.3.2 40905 1pnkB 557 2.56e+01 1ajqB 1d06A 130 2.60e+01 1drmA d.110.3.2 40906 1hlgA 371 2.61e+01 1hlgA c.69.1.6 34656 1e3dB 542 2.63e+01 1h2rL e.18.1.1 59189 1hzmA 154 2.67e+01 c.46.1.1 65975 1gmxA 108 2.77e+01 c.46.1.3 65355 1gn0A 108 2.79e+01 c.46.1.3 65358 1ajqB 557 2.92e+01 1ajqB 1gkfB 557 2.94e+01 1gm7B 557 2.94e+01 1gk9B 557 2.95e+01 1lit 144 2.99e+01 1qddA d.169.1.1 42325 1gm9B 557 3.01e+01 1edg 380 3.06e+01 1edg c.1.8.3 28807 1sesA 421 3.08e+01 1sesA a.2.7.1 15710 d.104.1.1 40710 1dkuA 317 3.21e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1hleA 345 3.24e+01 1ovaA e.1.1.1 42618 1fb6A 105 3.38e+01 1thx c.47.1.1 32739 1gm0A 142 3.56e+01 a.39.2.1 65297 1fvgA 199 3.67e+01 1fvaA d.58.28.1 39408 1drmA 131 3.80e+01 1drmA d.110.3.2 40908 1cbg 490 3.85e+01 1e70M c.1.8.4 28933 1dr9A 201 3.89e+01 1dr9A b.1.1.1 19762 b.1.1.3 21684