# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1octC 156 3.54e-01 1au7A a.4.1.1 15991 a.35.1.1 17017 1phk 298 5.54e-01 1cdkA d.144.1.1 41635 1e3oC 160 9.07e-01 1au7A a.4.1.1 59197 a.35.1.1 59198 1ipaA 274 1.10e+00 1g9pA 45 1.59e+00 g.3.6.2 65171 1sesA 421 1.91e+00 1sesA a.2.7.1 15710 d.104.1.1 40710 1e3dB 542 2.27e+00 1h2rL e.18.1.1 59189 1au7A 146 2.30e+00 1au7A a.4.1.1 15995 a.35.1.1 17021 1ltdA 506 2.37e+00 1gox c.1.4.1 28618 d.120.1.1 41086 16vpA 366 2.75e+00 16vpA d.180.1.1 42601 1aym3 238 2.83e+00 1aym3 1oxa 403 3.39e+00 1f4tA a.104.1.1 18965 1eupA 403 3.65e+00 1rom a.104.1.1 18967 1jjiA 311 3.84e+00 c.69.1.2 66766 1bed 181 3.89e+00 1fvkA a.44.1.1 17514 c.47.1.4 32808 1fvaA 217 3.96e+00 1fvaA d.58.28.1 39409 1jipA 403 4.01e+00 a.104.1.1 66748 1sra 151 4.40e+00 1sra a.39.1.3 17190 1qceA 123 4.43e+00 1qbzC h.3.2.1 45750 1ql0A 241 4.43e+00 1qaeA d.4.1.2 37139 1smnA 245 4.65e+00 1qaeA d.4.1.2 37143 1qaeA 245 4.73e+00 1qaeA d.4.1.2 37141 1g8tA 245 4.84e+00 1qaeA d.4.1.2 37137 1hlrA 907 5.05e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1nubA 229 5.13e+00 1sra a.39.1.3 17191 g.3.11.3 44330 g.15.1.1 44715 1cr1A 296 5.24e+00 1cr1A c.37.1.11 32286 1jf2A 195 5.39e+00 1ej3A a.39.1.5 62930 1e0cA 271 5.41e+00 1e0cA c.46.1.2 32717 c.46.1.2 32718 1iqcA 308 5.41e+00 a.3.1.5 66266 a.3.1.5 66267 1cr0A 296 6.07e+00 1cr1A c.37.1.11 32287 1cydA 244 6.60e+00 1cydA c.2.1.2 29825 1tif 78 7.13e+00 1tif d.15.8.1 37836 1k4wA 252 7.16e+00 1a7j 290 7.16e+00 1a7j c.37.1.6 31952 1el4A 195 7.28e+00 1ej3A a.39.1.5 59453 1d5yA 292 7.46e+00 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1rh2F 165 7.80e+00 1rh2F a.26.1.3 16898 1hleA 345 8.98e+00 1ovaA e.1.1.1 42618 1fqjC 42 9.28e+00 1fqjC j.51.1.1 46332 1b6cB 342 9.53e+00 1b6cB d.144.1.1 41673 1b8wA 42 9.92e+00 1b8wA g.9.1.1 44593 5csmA 256 1.05e+01 5csmA a.130.1.2 19494 1qfcA 306 1.07e+01 1uteA d.159.1.1 42077 1poiA 317 1.07e+01 1poiA c.63.1.1 34153 1pou 71 1.14e+01 1au7A a.35.1.1 17020 1fcbA 511 1.14e+01 1gox c.1.4.1 28620 d.120.1.1 41087 1csmA 256 1.18e+01 5csmA a.130.1.2 19495 2tmnE 316 1.21e+01 1hyt d.92.1.2 59055 8tlnE 316 1.22e+01 1hyt d.92.1.2 59075 6tmnE 316 1.22e+01 1hyt d.92.1.2 59071 1hyt 316 1.22e+01 1hyt d.92.1.2 59005 1hueA 90 1.42e+01 1huuA a.55.1.1 17900 1axh 37 1.53e+01 1axh g.3.6.2 44109 1i1rB 181 1.55e+01 1i1rB a.26.1.1 61548 1pvc2 271 1.66e+01 1aym2 1gv4A 528 1.75e+01 1ehyA 294 1.85e+01 1ehyA c.69.1.11 34693 1edg 380 1.98e+01 1edg c.1.8.3 28807 1irl 133 2.12e+01 3inkC a.26.1.2 16883 1gm0A 142 2.13e+01 a.39.2.1 65297 1xwl 580 2.26e+01 1xwl c.55.3.5 33708 e.8.1.1 43001 1ibcB 88 2.38e+01 1pauB 1ewnA 219 2.40e+01 1bnkA b.46.1.2 25762 1blxA 326 2.63e+01 1hcl d.144.1.1 41596 1d0iA 156 2.65e+01 2dhqA c.23.13.1 31383 1egdA 396 2.70e+01 3mdeA a.29.3.1 16596 e.6.1.1 42857 1gn0A 108 2.76e+01 c.46.1.3 65358 1c0pA 363 2.78e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 2irfG 113 2.88e+01 2irfG a.4.5.23 16185 1iioA 84 2.91e+01 a.39.4.1 66150 3bdpA 580 2.95e+01 1xwl c.55.3.5 33711 e.8.1.1 43004 1m6iA 493 2.95e+01 1a1s 314 3.04e+01 1othA c.78.1.1 35258 c.78.1.1 35259 1qddA 144 3.14e+01 1qddA d.169.1.1 42324 1kllA 130 3.16e+01 1qcrF 103 3.16e+01 1be3F f.2.1.8 43676 1g5aA 628 3.17e+01 b.71.1.1 65152 c.1.8.1 65153 1k6iA 352 3.21e+01 c.2.1.2 68223 1foaA 348 3.23e+01 1foaA c.68.1.10 59929 2ucz 165 3.27e+01 1u9aA d.20.1.1 38330 1ej1A 190 3.27e+01 1ejhA d.86.1.1 40144 1dytA 133 3.29e+01 7rsa d.5.1.1 37288 1jfwA 86 3.33e+01 j.9.4.1 62942 1kyqA 274 3.35e+01 1bmqB 88 3.53e+01 1pauB 1g8lA 411 3.58e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1drmA 131 3.61e+01 1drmA d.110.3.2 40908 1hy3A 294 3.62e+01 1ipcA 217 3.63e+01 1p35A 299 3.65e+01 1p35A b.28.1.1 23925 1drqA 131 3.75e+01 1drmA d.110.3.2 40910 1cl4A 60 3.76e+01 1cl4A g.40.1.1 45171 1qmtA 134 3.77e+01 7rsa d.5.1.1 37290 1hre 67 3.77e+01 1xdtR g.3.11.1 44300 1h1hA 134 3.89e+01 1fo8A 343 3.95e+01 1foaA c.68.1.10 59927