# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cozA 129 1.30e-16 1cozA c.26.1.2 31598 1b6tA 159 3.69e-03 1b6tA c.26.1.3 31600 1qjcA 158 5.09e-03 1b6tA c.26.1.3 63328 1f9aA 168 3.22e-02 1f9aA c.26.1.3 31602 1bs0A 384 8.95e-02 1bs0A c.67.1.4 34490 1ihoA 283 1.21e-01 1ihoA c.26.1.4 62390 1eny 268 1.63e-01 1eny c.2.1.2 29910 1zid 268 3.62e-01 1eny c.2.1.2 29911 1geqA 248 3.68e-01 2tysA c.1.2.4 28589 3mag 307 1.57e+00 3mag c.66.1.9 34205 1qdlB 195 1.61e+00 1qdlB c.23.16.1 31437 1ej2A 181 1.91e+00 1f9aA c.26.1.3 59414 1v39 322 1.95e+00 3mag c.66.1.9 34206 1vp9 322 1.95e+00 3mag c.66.1.9 34210 1vpt 348 2.06e+00 3mag c.66.1.9 34207 1bw9A 356 2.11e+00 1bw9A c.2.1.7 30274 c.58.1.1 33922 1qh3A 260 2.52e+00 1qh5A d.157.1.2 42059 1qh5A 260 2.65e+00 1qh5A d.157.1.2 42057 1f74A 293 2.80e+00 1nal3 c.1.10.1 29079 1e3jA 352 3.00e+00 1e3jA b.35.1.2 24765 c.2.1.1 29781 1k4mA 213 3.46e+00 1c1dA 355 3.52e+00 1bw9A c.2.1.7 30270 c.58.1.1 33918 1f6kA 293 3.69e+00 1nal3 c.1.10.1 29081 1l2tA 235 3.97e+00 1h61A 364 4.31e+00 1oyc c.1.4.1 60657 1im5A 180 4.43e+00 c.33.1.2 66211 1qrrA 394 6.34e+00 1qrrA c.2.1.2 29824 1jq5A 370 6.85e+00 e.22.1.2 67084 1wetA 340 7.11e+00 1qpzA a.35.1.5 17093 c.93.1.1 35670 1kq3A 376 8.07e+00 e.22.1.2 68790 1lvhA 221 8.37e+00 1qpzA 340 8.39e+00 1qpzA a.35.1.5 17097 c.93.1.1 35673 1huvA 380 8.46e+00 c.1.4.1 61277 1reqD 637 8.86e+00 1reqB c.1.19.1 29623 c.23.6.1 31250 1pymA 295 8.92e+00 1pymA c.1.12.4 29308 2tpsA 227 9.34e+00 2tpsA c.1.3.1 28591 1hh1A 143 9.76e+00 1gefA c.52.1.18 61036 1lssA 140 1.00e+01 1hx1B 114 1.03e+01 1hx1B a.7.7.1 61350 1a1s 314 1.05e+01 1othA c.78.1.1 35258 c.78.1.1 35259 1cqxA 403 1.05e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 7reqB 637 1.15e+01 1reqB c.1.19.1 29617 c.23.6.1 31244 1eo1A 124 1.17e+01 1eo1A c.55.5.1 33739 1eswA 500 1.22e+01 1cwyA c.1.8.1 59500 1jmvA 141 1.23e+01 c.29.1.2 66897 1qgiA 259 1.28e+01 1qgiA d.2.1.7 37001 1exzA 141 1.32e+01 1exzA a.26.1.2 16877 2anhA 446 1.34e+01 1b8jA c.76.1.1 35004 1din 236 1.40e+01 1din c.69.1.9 34682 1a53 247 1.43e+01 1a53 c.1.2.4 28564 1alkA 449 1.43e+01 1b8jA c.76.1.1 34994 1j4aA 333 1.46e+01 1ltdA 506 1.48e+01 1gox c.1.4.1 28618 d.120.1.1 41086 1ed8A 449 1.49e+01 1b8jA c.76.1.1 34988 1knvA 293 1.50e+01 c.52.1.7 68707 1j93A 353 1.50e+01 c.1.22.1 66454 1kamA 194 1.51e+01 1e7wA 291 1.53e+01 c.2.1.2 59373 1hqcA 324 1.54e+01 1hqcA a.4.5.11 16127 c.37.1.13 32424 2ae2A 260 1.54e+01 1bdb c.2.1.2 29945 1e32A 458 1.56e+01 1e32A b.52.2.3 59183 c.37.1.13 59184 d.31.1.1 59185 1b8jA 449 1.56e+01 1b8jA c.76.1.1 34992 1e3aA 260 1.57e+01 1ajqA d.153.1.2 41838 1reqB 637 1.57e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1lrzA 426 1.57e+01 1hg3A 225 1.57e+01 1hg3A c.1.1.1 61025 1g24A 211 1.60e+01 1g24A d.166.1.1 42270 1eudA 311 1.60e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1eucA 311 1.60e+01 2scuA c.2.1.8 30311 c.23.4.1 31139 1kh5A 449 1.62e+01 1cwyA 500 1.68e+01 1cwyA c.1.8.1 28789 1jqaA 370 1.68e+01 e.22.1.2 67085 1ewkA 490 1.69e+01 1ewkA c.93.1.1 35712 1gvfA 286 1.70e+01 1eluB 390 1.74e+01 1elqA c.67.1.3 34435 1elqA 390 1.80e+01 1elqA c.67.1.3 34436 1efdN 266 1.81e+01 1efdN c.92.2.1 35597 1eluA 390 1.82e+01 1elqA c.67.1.3 34434 1dbqA 289 1.84e+01 1qpzA c.93.1.1 35666 1ayx 492 1.90e+01 1ayx a.102.1.1 18825 4eugA 229 1.90e+01 3eugA c.18.1.1 31019 1evlA 401 1.90e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1elyA 449 1.91e+01 1b8jA c.76.1.1 35028 1liiA 363 1.94e+01 1ggvA 232 1.95e+01 1din c.69.1.9 34683 1eziA 228 1.96e+01 1eyrA c.68.1.3 34512 1qo0D 196 1.98e+01 1qo0D c.23.1.3 31125 1i37A 260 1.98e+01 1a28A a.123.1.1 61583 1bx4A 345 2.00e+01 1bx4A c.72.1.1 34935 1scfA 273 2.06e+01 1exzA a.26.1.2 16873 3eugA 229 2.11e+01 3eugA c.18.1.1 31018 1qsgA 265 2.12e+01 1eny c.2.1.2 29935 1c14A 262 2.14e+01 1eny c.2.1.2 29927 1g6oA 330 2.15e+01 1g6oA c.37.1.13 32430 1gk9A 260 2.18e+01 d.153.1.2 65246 1eyrA 228 2.19e+01 1eyrA c.68.1.3 34514 1igs 248 2.20e+01 1a53 c.1.2.4 28565 1cojA 212 2.21e+01 1avmA a.2.11.1 15737 d.44.1.1 38734 1js1X 324 2.25e+01 1jbkA 195 2.25e+01 1k3lA 221 2.29e+01 1qj4A 257 2.36e+01 1qj4A c.69.1.20 34796 1yasA 257 2.44e+01 1qj4A c.69.1.20 34801 1ihuA 589 2.44e+01 c.37.1.10 62394 c.37.1.10 62395 1uteA 313 2.49e+01 1uteA d.159.1.1 42078 1fcbA 511 2.51e+01 1gox c.1.4.1 28620 d.120.1.1 41087 1qg6A 261 2.54e+01 1eny c.2.1.2 29919 1juk 248 2.55e+01 1a53 c.1.2.4 28567 1kanA 253 2.67e+01 1knyA e.9.1.3 43234 1a6r 471 2.67e+01 3gcb d.3.1.1 37033 1es9A 232 2.69e+01 1wab c.23.10.3 31340 1qfjA 232 2.74e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1gseA 221 2.76e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1jnrB 150 2.76e+01 d.58.1.5 66969 1f2aA 215 2.82e+01 1cs8A d.3.1.1 37040 1d3gA 367 2.83e+01 1d3gA c.1.4.1 28600 1gcb 454 2.84e+01 3gcb d.3.1.1 37034 1a5t 334 2.84e+01 1a5t a.80.1.1 18450 c.37.1.13 32423 3gcb 470 2.86e+01 3gcb d.3.1.1 37032 1dik 874 2.89e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1wab 232 3.08e+01 1wab c.23.10.3 31341 1qmpA 130 3.13e+01 1dz3A c.23.1.1 31106 1jr3E 334 3.15e+01 a.80.1.1 63253 c.37.1.13 63254 1hlb 158 3.23e+01 1hlb a.1.1.2 15625 1i1kA 309 3.24e+01 1daaA e.17.1.1 61533 1lfwA 470 3.26e+01 1add 349 3.28e+01 1a4mA c.1.9.1 29020 1d3hA 367 3.32e+01 1d3gA c.1.4.1 28601 1dz3A 130 3.35e+01 1dz3A c.23.1.1 31105 1jlnA 297 3.44e+01 1pty c.45.1.2 63172 1dugA 234 3.51e+01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1jr3D 343 3.53e+01 a.80.1.1 63251 c.37.1.13 63252 1g55A 343 3.59e+01 1g55A c.66.1.10 34247 1f6yA 262 3.62e+01 1f6yA c.1.21.2 29673 1cv2A 296 3.72e+01 1bn6A c.69.1.8 34680 1hfeL 421 3.75e+01 1fehA c.96.1.1 36018 d.58.1.5 39001 1a4mA 349 3.78e+01 1a4mA c.1.9.1 29014 1ltqA 301 3.86e+01 1lv7A 257 3.86e+01 1g71A 347 3.87e+01 1g71A e.16.1.1 43268 1id1A 153 3.88e+01 1id1A c.2.1.9 62286 1aim 215 3.98e+01 1cs8A d.3.1.1 37044 1kgnA 329 3.98e+01 a.25.1.2 68584