# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cozA 129 1.62e-16 1cozA c.26.1.2 31598 1mrzA 293 4.11e-03 1od6A 160 3.52e-02 c.26.1.3 86836 1b6tA 159 6.92e-02 1b6tA c.26.1.3 31600 1qjcA 158 1.12e-01 1b6tA c.26.1.3 63328 1f9aA 168 2.64e-01 1f9aA c.26.1.3 31602 1ihoA 283 4.27e-01 1ihoA c.26.1.4 62390 1mopA 300 7.57e-01 c.26.1.4 85035 1n2eA 300 7.57e-01 c.26.1.4 85268 1lssA 140 9.40e-01 c.2.1.9 74246 1eny 268 1.13e+00 1eny c.2.1.2 29910 1zid 268 2.28e+00 1eny c.2.1.2 29911 1bs0A 384 2.64e+00 1bs0A c.67.1.4 34490 1hx1B 114 2.97e+00 1hx1B a.7.7.1 61350 1geqA 248 4.23e+00 2tysA c.1.2.4 28589 1im5A 180 4.67e+00 c.33.1.2 66211 1oi7A 288 5.07e+00 c.2.1.8 87049 c.23.4.1 87050 1j6uA 469 8.32e+00 c.5.1.1 77094 c.59.1.1 77095 c.72.2.1 77096 1qdlB 195 8.40e+00 1qdlB c.23.16.1 31437 1n2zA 245 1.16e+01 c.92.2.2 79865 1tig 94 1.24e+01 1tig d.68.1.1 39566 1hg3A 225 1.26e+01 1hg3A c.1.1.1 61025 1qgiA 259 1.35e+01 1qgiA d.2.1.7 37001 1ayx 492 1.36e+01 1ayx a.102.1.1 18825 1nbmG 272 1.38e+01 1e1qG c.49.2.1 33161 1ae1A 273 1.41e+01 1bdb c.2.1.2 29943 1e0tA 470 1.47e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1j24A 143 1.48e+01 c.52.1.20 84008 1f3aA 222 1.50e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1k3lA 221 1.56e+01 a.45.1.1 77229 c.47.1.5 77230 1k3yA 221 1.56e+01 a.45.1.1 77245 c.47.1.5 77246 1iyeA 309 1.62e+01 e.17.1.1 83786 1ewkA 490 1.65e+01 1ewkA c.93.1.1 35712 1e1qG 272 1.67e+01 1e1qG c.49.2.1 33162 1aps 98 1.75e+01 2acy d.58.10.1 39299 1m6nA 802 1.85e+01 a.162.1.1 78697 a.172.1.1 78698 c.37.1.19 78699 c.37.1.19 78700 1f74A 293 1.85e+01 1nal3 c.1.10.1 29079 1kvkA 395 1.89e+01 d.14.1.5 73060 d.58.26.3 73061 1qh3A 260 1.91e+01 1qh5A d.157.1.2 42059 1qh5A 260 1.95e+01 1qh5A d.157.1.2 42057 1a3gA 308 1.96e+01 1daaA e.17.1.1 43286 1gseA 221 2.13e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1k4mA 213 2.18e+01 c.26.1.3 77258 1dzfA 215 2.31e+01 1dzfA c.52.3.1 33344 d.78.1.1 39753 1vjw 60 2.31e+01 1fxd d.58.1.4 38991 1huvA 380 2.34e+01 c.1.4.1 61277 1bl3A 160 2.34e+01 1b9dA c.55.3.2 33655 1bmfG 272 2.36e+01 1e1qG c.49.2.1 33160 1ej2A 181 2.39e+01 1f9aA c.26.1.3 59414 1eo1A 124 2.44e+01 1eo1A c.55.5.1 33739 1stmA 157 2.46e+01 1stmA b.121.7.1 23281 1f6kA 293 2.48e+01 1nal3 c.1.10.1 29081 1f6yA 262 2.51e+01 1f6yA c.1.21.2 29673 1i88A 389 2.51e+01 c.95.1.2 66070 c.95.1.2 66071 1kp0A 402 2.52e+01 c.55.2.1 72834 d.127.1.1 72835 1efdN 266 2.54e+01 1efdN c.92.2.1 35597 1i86A 389 2.86e+01 c.95.1.2 66068 c.95.1.2 66069 2tpsA 227 2.98e+01 2tpsA c.1.3.1 28591 1jnrB 150 3.06e+01 d.58.1.5 66969 1j8mF 297 3.23e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1a1s 314 3.26e+01 1othA c.78.1.1 35258 c.78.1.1 35259 1dgmA 363 3.30e+01 1bx4A c.72.1.1 34936 1reqD 637 3.39e+01 1reqB c.1.19.1 29623 c.23.6.1 31250 1lki 180 3.70e+01 1lki a.26.1.1 16829 1hqcA 324 3.75e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1auyA 189 3.84e+01 1auyA b.121.4.6 23311 3pghA 587 3.86e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1reqA 727 3.90e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 2ae2A 260 3.92e+01 1bdb c.2.1.2 29945 1pymA 295 3.94e+01 1pymA c.1.12.7 29308