# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1aw9 216 5.53e-33 1gnwA a.45.1.1 17736 c.47.1.5 33030 1jlvA 209 3.71e-32 a.45.1.1 71729 c.47.1.5 71730 1axdA 209 1.03e-31 1gnwA a.45.1.1 17730 c.47.1.5 33024 1gnwA 211 2.67e-31 1gnwA a.45.1.1 17727 c.47.1.5 33021 1jlwA 219 2.45e-30 a.45.1.1 71741 c.47.1.5 71742 1ljrA 244 5.40e-28 1ljrA a.45.1.1 17707 c.47.1.5 33001 1nhyA 219 6.48e-28 a.45.1.1 80520 c.47.1.5 80521 1n2aA 201 3.72e-25 1a0fA 201 5.69e-25 1a0fA a.45.1.1 17737 c.47.1.5 33031 1f2eA 201 1.08e-24 1a0fA a.45.1.1 17745 c.47.1.5 33039 1pmt 203 6.61e-24 1a0fA a.45.1.1 17740 c.47.1.5 33034 1e6bA 221 1.13e-23 1e6bA a.45.1.1 59294 c.47.1.5 59295 1g6wA 261 1.46e-22 1hqoA a.45.1.1 17751 c.47.1.5 33045 1hqoA 258 1.74e-22 1hqoA a.45.1.1 17749 c.47.1.5 33043 1k0dA 260 2.46e-22 a.45.1.1 67930 c.47.1.5 67931 1fw1A 216 2.38e-21 a.45.1.1 60051 c.47.1.5 60052 1gwcA 230 4.49e-20 a.45.1.1 70660 c.47.1.5 70661 1eemA 241 1.07e-19 1eemA a.45.1.1 17717 c.47.1.5 33011 1oyjA 231 1.77e-18 a.45.1.1 87597 c.47.1.5 87598 1k3lA 221 1.98e-18 a.45.1.1 77229 c.47.1.5 77230 1k3yA 221 2.11e-18 a.45.1.1 77245 c.47.1.5 77246 1f3aA 222 3.50e-18 1pgtA a.45.1.1 17701 c.47.1.5 32995 1gseA 221 4.79e-18 1pgtA a.45.1.1 17667 c.47.1.5 32961 1gumA 222 1.11e-17 1pgtA a.45.1.1 17683 c.47.1.5 32977 1tw9A 206 1.27e-17 1gulA 222 1.39e-17 1pgtA a.45.1.1 17675 c.47.1.5 32969 1b8xA 280 6.29e-17 1b8xA a.45.1.1 17739 c.47.1.5 33033 1dugA 234 8.44e-17 1b8xA a.45.1.1 17718 c.47.1.5 33012 1iyhA 198 1.00e-16 a.45.1.1 83790 c.47.1.5 83791 1pgtA 210 2.84e-16 1pgtA a.45.1.1 17515 c.47.1.5 32809 1b4pA 217 3.32e-16 a.45.1.1 83158 c.47.1.5 83159 6gsvA 217 5.92e-16 1b8xA a.45.1.1 17633 c.47.1.5 32925 1pd21 199 1.54e-15 1pd21 2gsq 202 4.81e-15 1pd21 a.45.1.1 17715 c.47.1.5 33009 1oktA 211 4.09e-14 1m0uA 249 1.82e-13 a.45.1.1 78359 c.47.1.5 78360 1oe8A 211 2.01e-13 a.45.1.1 86905 c.47.1.5 86906 1k0nA 241 3.03e-11 a.45.1.1 67953 c.47.1.5 67954 1k0mA 241 7.32e-11 a.45.1.1 67949 c.47.1.5 67950 1g7oA 215 1.25e-10 1g7oA a.45.1.1 60332 c.47.1.5 60333 1ngvA 534 4.14e-01 c.111.1.2 85698 1t6cA 315 4.28e-01 3grx 82 4.82e-01 1aba c.47.1.1 32769 1uaaA 673 1.32e+00 1pjr c.37.1.19 32401 c.37.1.19 32402 1h75A 81 1.42e+00 1h75A c.47.1.1 60716 1p68A 102 1.62e+00 1ble 163 1.91e+00 1ble c.38.1.1 32475 1gtxA 472 2.41e+00 1gtxA c.67.1.4 34464 1oxjA 173 3.28e+00 a.60.1.2 87517 a.118.1.13 87518 1ohvA 472 3.46e+00 1cg5B 141 3.63e+00 1cg5B a.1.1.2 15585 1mnzA 388 4.66e+00 c.1.15.3 79328 1wdnA 226 4.76e+00 1lst c.94.1.1 35816 1u2kA 309 4.77e+00 1q9uA 130 5.10e+00 1phk 298 5.26e+00 1cdkA d.144.1.7 41635 4xis 387 5.72e+00 4xis c.1.15.3 29421 1xis 387 6.15e+00 4xis c.1.15.3 29422 2xis 387 6.48e+00 4xis c.1.15.3 29427 3xis 387 6.76e+00 4xis c.1.15.3 29423 1dkzA 219 7.05e+00 1dkzA e.20.1.1 43314 1fre 42 7.20e+00 1fre g.43.1.1 45320 1c9kB 180 7.21e+00 1c9kB c.37.1.11 32364 1gw9A 388 7.35e+00 c.1.15.3 70658 1fo5A 85 8.23e+00 1fo5A c.47.1.1 59922 1cbuA 180 8.57e+00 1c9kB c.37.1.11 32360 1jw9B 249 9.44e+00 c.111.1.1 67377 1gggB 226 9.57e+00 1lst c.94.1.1 35818 1p5hA 428 9.84e+00 c.123.1.1 87802 1l5xA 280 1.05e+01 c.106.1.1 77718 1l1eA 287 1.10e+01 c.66.1.18 73454 1c3hA 137 1.11e+01 1c28A 135 1.11e+01 1c28A b.22.1.1 23857 1p35A 299 1.16e+01 1p35A b.28.1.1 23925 1pg4A 652 1.18e+01 e.23.1.1 88067 1itkA 731 1.24e+01 a.93.1.3 71417 a.93.1.3 71418 1pmi 440 1.33e+01 1pmi b.82.1.3 28114 1v84A 253 1.34e+01 1xtnA 120 1.35e+01 1nnmA 652 1.37e+01 1w1wA 430 1.38e+01 1umdA 367 1.42e+01 1ego 85 1.43e+01 1kte c.47.1.1 32767 1g1sA 162 1.50e+01 d.169.1.1 65100 g.3.11.1 65101 1bed 181 1.58e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1mkrA 294 1.83e+01 a.93.1.1 84997 1b6fA 159 1.94e+01 1bv1 d.129.3.1 41316 1n08A 163 1.96e+01 b.43.5.1 79730 1gmiA 136 1.99e+01 b.7.1.1 65309 1mwvA 714 2.00e+01 a.93.1.3 85161 a.93.1.3 85162 1s8iA 121 2.01e+01 1sjyA 159 2.04e+01 1gd9A 389 2.28e+01 c.67.1.1 60454 1egr 85 2.31e+01 1kte c.47.1.1 32765 1gdeA 389 2.36e+01 c.67.1.1 60456 1euoA 180 2.37e+01 1np1A b.60.1.1 27163 1qjaA 245 2.38e+01 1qjaA a.118.7.1 19204 1qqfA 277 2.44e+01 1c3d a.102.4.4 18875 1hqcA 324 2.46e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1ji0A 240 2.46e+01 c.37.1.12 71665 1ds1A 324 2.46e+01 1drtA b.82.2.2 28127 2sqcA 631 2.50e+01 2sqcA a.102.4.2 18854 a.102.4.2 18855 1vhmA 195 2.61e+01 1gtdA 85 2.67e+01 d.58.45.1 76344 1e8oA 85 2.72e+01 1914 d.49.1.1 38773 1dceA 567 2.76e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1dkxA 219 2.83e+01 1dkzA e.20.1.1 43315 1pa4A 116 2.83e+01 1kpgA 287 2.88e+01 c.66.1.18 68735 1dseA 292 2.91e+01 1ryc a.93.1.1 59130 1muwA 386 2.98e+01 c.1.15.3 79495 1ryc 294 3.07e+01 1ryc a.93.1.1 18601 1e4uA 78 3.08e+01 1e4uA g.44.1.1 59231 1ejxA 100 3.13e+01 d.8.1.1 83182 1peeA 180 3.16e+01 1v74A 107 3.18e+01 1fpqA 372 3.41e+01 1fpqA a.4.5.29 59947 c.66.1.12 59948 1n25A 368 3.42e+01 c.37.1.20 85264 1jsdB 176 3.44e+01 h.3.1.1 63259 1ppa 121 3.45e+01 1poa a.133.1.2 19550 1fwcA 100 3.46e+01 1ubpA d.8.1.1 37331 2kauA 100 3.46e+01 1ubpA d.8.1.1 37335 1sqc 631 3.50e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859 1fqiA 147 3.60e+01 1agrE a.91.1.1 18542 1i5hW 50 3.60e+01 1i5hW b.72.1.1 61785 1a8y 367 3.64e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1ccg 291 3.66e+01 1ryc a.93.1.1 18627 1km4A 247 3.73e+01 c.1.2.3 72740 1c3cA 429 3.74e+01 1c3cA a.127.1.1 19425 1qfnA 85 3.77e+01 1qfnA c.47.1.1 32768 1v3wA 173 3.85e+01 1hfoA 113 3.86e+01 d.80.1.3 61006 1ugpA 203 3.89e+01 1jj2I 145 3.92e+01 1ffkG c.21.1.1 63094 1svmA 377 3.96e+01