Best Alignments for YGR041W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1tgoA/YGR041W-1tgoA-global-str-1.5-adpstyle5.a2m 1.1117e+011.3928e-02 1tgoA c.55.3.5
e.8.1.1
1kxlA/YGR041W-1kxlA-global-str-1.5-adpstyle5.a2m 6.9093e+002.1907e-02
1tgoA/YGR041W-1tgoA-local-str-1.5-adpstyle5.a2m 1.1117e+013.5146e-02 1tgoA c.55.3.5
e.8.1.1
1xsoA/YGR041W-1xsoA-local-str-1.5-adpstyle5.a2m 6.1654e+005.1564e-01 1mfmA b.1.8.1
1qgtA/YGR041W-1qgtA-global-str-1.5-adpstyle5.a2m 1.4333e+015.5226e-01 1qgtA a.62.1.1
1qgtA/YGR041W-1qgtA-local-str-1.5-adpstyle5.a2m 1.4333e+019.9248e-01 1qgtA a.62.1.1
1xsoA/1mfmA-YGR041W-fssp-global-adpstyle5.a2m 6.1654e+001.3922e+00 1mfmA b.1.8.1
1xsoA/YGR041W-1xsoA-local-str-0.3-adpstyle5.a2m 6.1654e+002.1080e+00 1mfmA b.1.8.1
1xsoA/YGR041W-1xsoA-global-str-1.5-adpstyle5.a2m 6.1654e+002.1785e+00 1mfmA b.1.8.1
1xsoA/YGR041W-1xsoA-local-stride-ebghtl-0.3-adpstyle5.a2m 6.1654e+002.3373e+00 1mfmA b.1.8.1
1xsoA/1mfmA-YGR041W-fssp-local-adpstyle5.a2m 6.1654e+002.4156e+00 1mfmA b.1.8.1
1sgfA/5ptp-YGR041W-fssp-global-adpstyle5.a2m 1.2602e+012.7300e+00 5ptp b.47.1.2
1kxlA/YGR041W-1kxlA-global-str-0.3-adpstyle5.a2m 6.9093e+002.8075e+00
1kxlA/YGR041W-1kxlA-global-stride-ebghtl-0.3-adpstyle5.a2m 6.9093e+002.9575e+00
1kxlA/YGR041W-1kxlA-local-adpstyle5.a2m 6.9093e+003.1067e+00
1kxlA/YGR041W-1kxlA-local-adpstyle1.a2m 6.9093e+003.1067e+00
1tgoA/1tgoA-YGR041W-fssp-global-adpstyle5.a2m 1.1117e+013.3313e+00 1tgoA c.55.3.5
e.8.1.1
1sgfA/5ptp-YGR041W-fssp-local-adpstyle5.a2m 1.2602e+013.4050e+00 5ptp b.47.1.2
1qgtA/1qgtA-YGR041W-fssp-global-adpstyle5.a2m 1.4333e+013.5383e+00 1qgtA a.62.1.1
1xsoA/YGR041W-1xsoA-local-dssp-ebghstl-0.3-adpstyle5.a2m 6.1654e+003.5817e+00 1mfmA b.1.8.1
1kxlA/YGR041W-1kxlA-global-dssp-ebghstl-0.3-adpstyle5.a2m 6.9093e+003.5989e+00
1tgoA/YGR041W-1tgoA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.1117e+013.7844e+00 1tgoA c.55.3.5
e.8.1.1
1xsoA/YGR041W-1xsoA-global-stride-ebghtl-0.3-adpstyle5.a2m 6.1654e+003.8384e+00 1mfmA b.1.8.1
1tgoA/1tgoA-YGR041W-fssp-local-adpstyle5.a2m 1.1117e+013.8898e+00 1tgoA c.55.3.5
e.8.1.1
1tgoA/YGR041W-1tgoA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.1117e+014.1006e+00 1tgoA c.55.3.5
e.8.1.1
1xsoA/YGR041W-1xsoA-local-alpha-0.3-adpstyle5.a2m 6.1654e+004.3014e+00 1mfmA b.1.8.1
1kxlA/YGR041W-1kxlA-simplesw-adpstyle1.a2m 6.9093e+004.3204e+00
1kxlA/YGR041W-1kxlA-simplesw-adpstyle5.a2m 6.9093e+004.3204e+00
1kxlA/1kxlA-YGR041W-local-adpstyle5.a2m 6.9093e+004.3793e+00
1kxlA/1kxlA-YGR041W-local-adpstyle1.a2m 6.9093e+004.3793e+00
1d5aA/1tgoA-YGR041W-fssp-global-adpstyle5.a2m 1.7125e+014.7751e+00 1tgoA c.55.3.5
e.8.1.1
1xsoA/YGR041W-1xsoA-global-str-0.3-adpstyle5.a2m 6.1654e+004.8383e+00 1mfmA b.1.8.1
1qgtA/1qgtA-YGR041W-fssp-local-adpstyle5.a2m 1.4333e+015.0476e+00 1qgtA a.62.1.1
1tgoA/YGR041W-1tgoA-global-alpha-0.3-adpstyle5.a2m 1.1117e+015.2334e+00 1tgoA c.55.3.5
e.8.1.1
1mdq/4mbp-YGR041W-fssp-local-adpstyle5.a2m 1.5367e+015.4451e+00 4mbp c.94.1.1
1kxlA/YGR041W-1kxlA-local-str-1.5-adpstyle5.a2m 6.9093e+005.5063e+00
1d5aA/1tgoA-YGR041W-fssp-local-adpstyle5.a2m 1.7125e+015.5756e+00 1tgoA c.55.3.5
e.8.1.1
1mdq/4mbp-YGR041W-fssp-global-adpstyle5.a2m 1.5367e+015.7225e+00 4mbp c.94.1.1
1tgoA/YGR041W-1tgoA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.1117e+015.9601e+00 1tgoA c.55.3.5
e.8.1.1
1tgoA/YGR041W-1tgoA-local-alpha-0.3-adpstyle5.a2m 1.1117e+015.9862e+00 1tgoA c.55.3.5
e.8.1.1
1tgoA/YGR041W-1tgoA-local-str-0.3-adpstyle5.a2m 1.1117e+016.0952e+00 1tgoA c.55.3.5
e.8.1.1
1xsoA/1xsoA-YGR041W-global-adpstyle5.a2m 6.1654e+006.1477e+00 1mfmA b.1.8.1
1xsoA/1xsoA-YGR041W-global-adpstyle1.a2m 6.1654e+006.1477e+00 1mfmA b.1.8.1
1fqaA/4mbp-YGR041W-fssp-local-adpstyle5.a2m 1.9573e+016.6613e+00 4mbp c.94.1.1
1xsoA/YGR041W-1xsoA-global-dssp-ebghstl-0.3-adpstyle5.a2m 6.1654e+006.8404e+00 1mfmA b.1.8.1
1fqaA/4mbp-YGR041W-fssp-global-adpstyle5.a2m 1.9573e+017.0008e+00 4mbp c.94.1.1
1qgtA/YGR041W-1qgtA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.4333e+017.3088e+00 1qgtA a.62.1.1
1qgtA/YGR041W-1qgtA-local-str-0.3-adpstyle5.a2m 1.4333e+017.3233e+00 1qgtA a.62.1.1
1qgtA/YGR041W-1qgtA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.4333e+017.4115e+00 1qgtA a.62.1.1
1qgtA/YGR041W-1qgtA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.4333e+017.5737e+00 1qgtA a.62.1.1
1xsoA/YGR041W-1xsoA-local-adpstyle5.a2m 6.1654e+008.2464e+00 1mfmA b.1.8.1
1xsoA/YGR041W-1xsoA-local-adpstyle1.a2m 6.1654e+008.2464e+00 1mfmA b.1.8.1
1qgtA/YGR041W-1qgtA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.4333e+018.3039e+00 1qgtA a.62.1.1
1tgoA/YGR041W-1tgoA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.1117e+018.4993e+00 1tgoA c.55.3.5
e.8.1.1
1qgtA/YGR041W-1qgtA-local-alpha-0.3-adpstyle5.a2m 1.4333e+018.5680e+00 1qgtA a.62.1.1
1xsoA/YGR041W-1xsoA-global-alpha-0.3-adpstyle5.a2m 6.1654e+008.6278e+00 1mfmA b.1.8.1
1kxlA/YGR041W-1kxlA-global-alpha-0.3-adpstyle5.a2m 6.9093e+009.0286e+00
1kxlA/YGR041W-1kxlA-local-str-0.3-adpstyle5.a2m 6.9093e+009.0804e+00
1qgtA/YGR041W-1qgtA-global-str-0.3-adpstyle5.a2m 1.4333e+019.0858e+00 1qgtA a.62.1.1
1kxlA/YGR041W-1kxlA-local-dssp-ebghstl-0.3-adpstyle5.a2m 6.9093e+009.0888e+00
1xsoA/YGR041W-1xsoA-global-adpstyle1.a2m 6.1654e+009.3562e+00 1mfmA b.1.8.1
1xsoA/YGR041W-1xsoA-global-adpstyle5.a2m 6.1654e+009.3562e+00 1mfmA b.1.8.1
1sgfA/YGR041W-1sgfA-global-adpstyle5.a2m 1.2602e+019.9099e+00 5ptp b.47.1.2
1sgfA/YGR041W-1sgfA-global-adpstyle1.a2m 1.2602e+019.9099e+00 5ptp b.47.1.2
1kxlA/YGR041W-1kxlA-local-alpha-0.3-adpstyle5.a2m 6.9093e+001.0216e+01
1qgtA/YGR041W-1qgtA-global-alpha-0.3-adpstyle5.a2m 1.4333e+011.0527e+01 1qgtA a.62.1.1
1sgfA/YGR041W-1sgfA-local-adpstyle5.a2m 1.2602e+011.0673e+01 5ptp b.47.1.2
1sgfA/YGR041W-1sgfA-local-adpstyle1.a2m 1.2602e+011.0673e+01 5ptp b.47.1.2
1tgoA/YGR041W-1tgoA-global-str-0.3-adpstyle5.a2m 1.1117e+011.2603e+01 1tgoA c.55.3.5
e.8.1.1
1tgoA/YGR041W-1tgoA-local-adpstyle5.a2m 1.1117e+011.2647e+01 1tgoA c.55.3.5
e.8.1.1
1tgoA/YGR041W-1tgoA-local-adpstyle1.a2m 1.1117e+011.2647e+01 1tgoA c.55.3.5
e.8.1.1
1jvxA/YGR041W-1jvxA-local-adpstyle1.a2m 1.4835e+011.2838e+01 c.94.1.1
1jvxA/YGR041W-1jvxA-local-adpstyle5.a2m 1.4835e+011.2838e+01 c.94.1.1
1jvyA/YGR041W-1jvyA-local-adpstyle5.a2m 1.5216e+011.3208e+01 c.94.1.1
1jvyA/YGR041W-1jvyA-local-adpstyle1.a2m 1.5216e+011.3208e+01 c.94.1.1
1mdq/YGR041W-1mdq-local-adpstyle5.a2m 1.5367e+011.3351e+01 4mbp c.94.1.1
1mdq/YGR041W-1mdq-local-adpstyle1.a2m 1.5367e+011.3351e+01 4mbp c.94.1.1
1d5aA/YGR041W-1d5aA-local-adpstyle5.a2m 1.7125e+011.5082e+01 1tgoA c.55.3.5
e.8.1.1
1d5aA/YGR041W-1d5aA-local-adpstyle1.a2m 1.7125e+011.5082e+01 1tgoA c.55.3.5
e.8.1.1
1xsoA/1xsoA-YGR041W-local-adpstyle1.a2m 6.1654e+001.5192e+01 1mfmA b.1.8.1
1xsoA/1xsoA-YGR041W-local-adpstyle5.a2m 6.1654e+001.5192e+01 1mfmA b.1.8.1
1kxlA/YGR041W-1kxlA-local-stride-ebghtl-0.3-adpstyle5.a2m 6.9093e+001.6685e+01
1fqaA/YGR041W-1fqaA-local-adpstyle5.a2m 1.9573e+011.7529e+01 4mbp c.94.1.1
1fqaA/YGR041W-1fqaA-local-adpstyle1.a2m 1.9573e+011.7529e+01 4mbp c.94.1.1
1xsoA/YGR041W-1xsoA-simplesw-adpstyle5.a2m 6.1654e+001.8155e+01 1mfmA b.1.8.1
1xsoA/YGR041W-1xsoA-simplesw-adpstyle1.a2m 6.1654e+001.8155e+01 1mfmA b.1.8.1
1jvxA/YGR041W-1jvxA-simplesw-adpstyle5.a2m 1.4835e+011.8888e+01 c.94.1.1
1jvxA/YGR041W-1jvxA-simplesw-adpstyle1.a2m 1.4835e+011.8888e+01 c.94.1.1
1jvyA/YGR041W-1jvyA-simplesw-adpstyle5.a2m 1.5216e+011.9287e+01 c.94.1.1
1jvyA/YGR041W-1jvyA-simplesw-adpstyle1.a2m 1.5216e+011.9287e+01 c.94.1.1
1mdq/YGR041W-1mdq-simplesw-adpstyle1.a2m 1.5367e+011.9436e+01 4mbp c.94.1.1
1mdq/YGR041W-1mdq-simplesw-adpstyle5.a2m 1.5367e+011.9436e+01 4mbp c.94.1.1
1kxlA/YGR041W-1kxlA-global-adpstyle1.a2m 6.9093e+001.9600e+01
1kxlA/YGR041W-1kxlA-global-adpstyle5.a2m 6.9093e+001.9600e+01
1qgtA/YGR041W-1qgtA-local-adpstyle5.a2m 1.4333e+012.1103e+01 1qgtA a.62.1.1
1qgtA/YGR041W-1qgtA-local-adpstyle1.a2m 1.4333e+012.1103e+01 1qgtA a.62.1.1
1sgfA/YGR041W-1sgfA-simplesw-adpstyle5.a2m 1.2602e+012.1278e+01 5ptp b.47.1.2
1sgfA/YGR041W-1sgfA-simplesw-adpstyle1.a2m 1.2602e+012.1278e+01 5ptp b.47.1.2
1kxlA/1kxlA-YGR041W-global-adpstyle5.a2m 6.9093e+002.2040e+01
1kxlA/1kxlA-YGR041W-global-adpstyle1.a2m 6.9093e+002.2040e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001