Best Alignments for YGR039W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hf2A/YGR039W-1hf2A-global-str-1.5-adpstyle5.a2m 8.9828e+001.1531e-01 1hf2A c.102.1.1
b.80.3.1
1bwfO/1glcG-YGR039W-fssp-local-adpstyle5.a2m 1.2762e+005.0336e-01 1glcG c.55.1.4
1hf2A/YGR039W-1hf2A-global-str-0.3-adpstyle5.a2m 8.9828e+005.0890e-01 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-global-dssp-ebghstl-0.3-adpstyle5.a2m 8.9828e+005.4356e-01 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-global-stride-ebghtl-0.3-adpstyle5.a2m 8.9828e+005.9426e-01 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-global-alpha-0.3-adpstyle5.a2m 8.9828e+006.9398e-01 1hf2A c.102.1.1
b.80.3.1
1bwfO/1glcG-YGR039W-fssp-global-adpstyle5.a2m 1.2762e+007.2618e-01 1glcG c.55.1.4
1hf2A/YGR039W-1hf2A-local-str-1.5-adpstyle5.a2m 8.9828e+001.3384e+00 1hf2A c.102.1.1
b.80.3.1
1bwfO/YGR039W-1bwfO-simplesw-adpstyle5.a2m 1.2762e+001.3953e+00 1glcG c.55.1.4
1bwfO/YGR039W-1bwfO-simplesw-adpstyle1.a2m 1.2762e+001.3953e+00 1glcG c.55.1.4
1bwfO/YGR039W-1bwfO-local-adpstyle1.a2m 1.2762e+001.3974e+00 1glcG c.55.1.4
1bwfO/YGR039W-1bwfO-local-adpstyle5.a2m 1.2762e+001.3974e+00 1glcG c.55.1.4
1f03A/1cyo-YGR039W-fssp-global-adpstyle5.a2m 1.3259e+012.3065e+00 1cyo d.120.1.1
1i5uA/1cyo-YGR039W-fssp-global-adpstyle5.a2m 1.4449e+012.4778e+00 1cyo d.120.1.1
1pciA/1cs8A-YGR039W-fssp-local-adpstyle5.a2m 8.4545e+002.9631e+00 1cs8A d.3.1.1
1f03A/1cyo-YGR039W-fssp-local-adpstyle5.a2m 1.3259e+013.0278e+00 1cyo d.120.1.1
1i5uA/1cyo-YGR039W-fssp-local-adpstyle5.a2m 1.4449e+013.2526e+00 1cyo d.120.1.1
1f03A/YGR039W-1f03A-global-adpstyle1.a2m 1.3259e+013.4590e+00 1cyo d.120.1.1
1f03A/YGR039W-1f03A-global-adpstyle5.a2m 1.3259e+013.4590e+00 1cyo d.120.1.1
1pciA/1cs8A-YGR039W-fssp-global-adpstyle5.a2m 8.4545e+003.4798e+00 1cs8A d.3.1.1
1i5uA/YGR039W-1i5uA-global-adpstyle5.a2m 1.4449e+013.9553e+00 1cyo d.120.1.1
1i5uA/YGR039W-1i5uA-global-adpstyle1.a2m 1.4449e+013.9553e+00 1cyo d.120.1.1
1h2eA/YGR039W-1h2eA-local-str-1.5-adpstyle5.a2m 1.7627e+014.2933e+00
1ebbA/YGR039W-1ebbA-global-str-1.5-adpstyle5.a2m 1.9260e+014.8482e+00 c.60.1.1
1hf2A/YGR039W-1hf2A-global-adpstyle5.a2m 8.9828e+005.0862e+00 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-global-adpstyle1.a2m 8.9828e+005.0862e+00 1hf2A c.102.1.1
b.80.3.1
1bwfO/YGR039W-1bwfO-global-adpstyle5.a2m 1.2762e+005.2521e+00 1glcG c.55.1.4
1bwfO/YGR039W-1bwfO-global-adpstyle1.a2m 1.2762e+005.2521e+00 1glcG c.55.1.4
1bhe/1bhe-YGR039W-fssp-local-adpstyle5.a2m 2.2566e+015.6606e+00 1bhe b.80.1.3
1bhe/1bhe-YGR039W-fssp-global-adpstyle5.a2m 2.2566e+016.5267e+00 1bhe b.80.1.3
1h2eA/YGR039W-1h2eA-global-str-1.5-adpstyle5.a2m 1.7627e+016.6320e+00
1havB/YGR039W-1havB-global-adpstyle5.a2m 2.1654e+016.6521e+00 1havA b.47.1.4
1havB/YGR039W-1havB-global-adpstyle1.a2m 2.1654e+016.6521e+00 1havA b.47.1.4
1havB/1havA-YGR039W-fssp-local-adpstyle5.a2m 2.1654e+017.0139e+00 1havA b.47.1.4
1havB/1havA-YGR039W-fssp-global-adpstyle5.a2m 2.1654e+017.6328e+00 1havA b.47.1.4
1ebbA/YGR039W-1ebbA-local-str-1.5-adpstyle5.a2m 1.9260e+018.2959e+00 c.60.1.1
1hf2A/YGR039W-1hf2A-local-stride-ebghtl-0.3-adpstyle5.a2m 8.9828e+009.2629e+00 1hf2A c.102.1.1
b.80.3.1
1pciA/YGR039W-1pciA-simplesw-adpstyle1.a2m 8.4545e+009.5714e+00 1cs8A d.3.1.1
1pciA/YGR039W-1pciA-simplesw-adpstyle5.a2m 8.4545e+009.5714e+00 1cs8A d.3.1.1
1hf2A/YGR039W-1hf2A-local-str-0.3-adpstyle5.a2m 8.9828e+009.6608e+00 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-local-dssp-ebghstl-0.3-adpstyle5.a2m 8.9828e+009.8378e+00 1hf2A c.102.1.1
b.80.3.1
1bhe/YGR039W-1bhe-global-str-1.5-adpstyle5.a2m 2.2566e+019.8386e+00 1bhe b.80.1.3
1pciA/YGR039W-1pciA-local-adpstyle1.a2m 8.4545e+001.0334e+01 1cs8A d.3.1.1
1pciA/YGR039W-1pciA-local-adpstyle5.a2m 8.4545e+001.0334e+01 1cs8A d.3.1.1
1hf2A/1hf2A-YGR039W-local-adpstyle1.a2m 8.9828e+001.0883e+01 1hf2A c.102.1.1
b.80.3.1
1hf2A/1hf2A-YGR039W-local-adpstyle5.a2m 8.9828e+001.0883e+01 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-local-alpha-0.3-adpstyle5.a2m 8.9828e+001.1363e+01 1hf2A c.102.1.1
b.80.3.1
1hf2A/1hf2A-YGR039W-global-adpstyle5.a2m 8.9828e+001.5202e+01 1hf2A c.102.1.1
b.80.3.1
1hf2A/1hf2A-YGR039W-global-adpstyle1.a2m 8.9828e+001.5202e+01 1hf2A c.102.1.1
b.80.3.1
1h2eA/YGR039W-1h2eA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.7627e+011.5475e+01
1h2eA/1h2eA-YGR039W-global-adpstyle1.a2m 1.7627e+011.5612e+01
1h2eA/1h2eA-YGR039W-global-adpstyle5.a2m 1.7627e+011.5612e+01
1h2eA/YGR039W-1h2eA-local-str-0.3-adpstyle5.a2m 1.7627e+011.6194e+01
1f03A/YGR039W-1f03A-local-adpstyle5.a2m 1.3259e+011.6525e+01 1cyo d.120.1.1
1f03A/YGR039W-1f03A-local-adpstyle1.a2m 1.3259e+011.6525e+01 1cyo d.120.1.1
1pciA/YGR039W-1pciA-global-adpstyle1.a2m 8.4545e+001.6666e+01 1cs8A d.3.1.1
1pciA/YGR039W-1pciA-global-adpstyle5.a2m 8.4545e+001.6666e+01 1cs8A d.3.1.1
1f03A/YGR039W-1f03A-simplesw-adpstyle1.a2m 1.3259e+011.6847e+01 1cyo d.120.1.1
1f03A/YGR039W-1f03A-simplesw-adpstyle5.a2m 1.3259e+011.6847e+01 1cyo d.120.1.1
1h2eA/YGR039W-1h2eA-local-alpha-0.3-adpstyle5.a2m 1.7627e+011.7159e+01
1ebbA/YGR039W-1ebbA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.9260e+011.7517e+01 c.60.1.1
1i5uA/YGR039W-1i5uA-local-adpstyle1.a2m 1.4449e+011.8071e+01 1cyo d.120.1.1
1i5uA/YGR039W-1i5uA-local-adpstyle5.a2m 1.4449e+011.8071e+01 1cyo d.120.1.1
1h2eA/YGR039W-1h2eA-global-alpha-0.3-adpstyle5.a2m 1.7627e+011.8276e+01
1i5uA/YGR039W-1i5uA-simplesw-adpstyle1.a2m 1.4449e+011.8359e+01 1cyo d.120.1.1
1i5uA/YGR039W-1i5uA-simplesw-adpstyle5.a2m 1.4449e+011.8359e+01 1cyo d.120.1.1
1h2eA/YGR039W-1h2eA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.7627e+011.8583e+01
1ebbA/YGR039W-1ebbA-local-str-0.3-adpstyle5.a2m 1.9260e+011.8595e+01 c.60.1.1
1bhe/YGR039W-1bhe-global-alpha-0.3-adpstyle5.a2m 2.2566e+011.9066e+01 1bhe b.80.1.3
1h2eA/1h2eA-YGR039W-local-adpstyle1.a2m 1.7627e+011.9141e+01
1h2eA/1h2eA-YGR039W-local-adpstyle5.a2m 1.7627e+011.9141e+01
1h2eA/YGR039W-1h2eA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.7627e+011.9714e+01
1ebbA/YGR039W-1ebbA-local-alpha-0.3-adpstyle5.a2m 1.9260e+011.9766e+01 c.60.1.1
1bhe/YGR039W-1bhe-local-stride-ebghtl-0.3-adpstyle5.a2m 2.2566e+011.9769e+01 1bhe b.80.1.3
1ebbA/1ebbA-YGR039W-local-adpstyle1.a2m 1.9260e+012.0261e+01 c.60.1.1
1ebbA/1ebbA-YGR039W-local-adpstyle5.a2m 1.9260e+012.0261e+01 c.60.1.1
1bhe/YGR039W-1bhe-local-dssp-ebghstl-0.3-adpstyle5.a2m 2.2566e+012.0312e+01 1bhe b.80.1.3
1ebbA/YGR039W-1ebbA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.9260e+012.1090e+01 c.60.1.1
1h2eA/YGR039W-1h2eA-global-str-0.3-adpstyle5.a2m 1.7627e+012.1784e+01
1hf2A/YGR039W-1hf2A-local-adpstyle5.a2m 8.9828e+002.2417e+01 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-local-adpstyle1.a2m 8.9828e+002.2417e+01 1hf2A c.102.1.1
b.80.3.1
1bhe/YGR039W-1bhe-global-adpstyle5.a2m 2.2566e+012.2471e+01 1bhe b.80.1.3
1bhe/YGR039W-1bhe-global-adpstyle1.a2m 2.2566e+012.2471e+01 1bhe b.80.1.3
1ebbA/1ebbA-YGR039W-global-adpstyle1.a2m 1.9260e+012.2624e+01 c.60.1.1
1ebbA/1ebbA-YGR039W-global-adpstyle5.a2m 1.9260e+012.2624e+01 c.60.1.1
1bhe/YGR039W-1bhe-local-alpha-0.3-adpstyle5.a2m 2.2566e+012.2687e+01 1bhe b.80.1.3
1hf2A/YGR039W-1hf2A-simplesw-adpstyle1.a2m 8.9828e+002.2844e+01 1hf2A c.102.1.1
b.80.3.1
1hf2A/YGR039W-1hf2A-simplesw-adpstyle5.a2m 8.9828e+002.2844e+01 1hf2A c.102.1.1
b.80.3.1
1bhe/YGR039W-1bhe-global-dssp-ebghstl-0.3-adpstyle5.a2m 2.2566e+012.3702e+01 1bhe b.80.1.3
1h2eA/YGR039W-1h2eA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.7627e+012.4432e+01
1bhe/YGR039W-1bhe-global-stride-ebghtl-0.3-adpstyle5.a2m 2.2566e+012.4438e+01 1bhe b.80.1.3
1bhe/YGR039W-1bhe-simplesw-adpstyle1.a2m 2.2566e+012.4794e+01 1bhe b.80.1.3
1bhe/YGR039W-1bhe-simplesw-adpstyle5.a2m 2.2566e+012.4794e+01 1bhe b.80.1.3
1bhe/YGR039W-1bhe-global-str-0.3-adpstyle5.a2m 2.2566e+012.6017e+01 1bhe b.80.1.3
1bhe/YGR039W-1bhe-local-adpstyle1.a2m 2.2566e+012.6114e+01 1bhe b.80.1.3
1bhe/YGR039W-1bhe-local-adpstyle5.a2m 2.2566e+012.6114e+01 1bhe b.80.1.3
1havB/YGR039W-1havB-local-adpstyle1.a2m 2.1654e+012.7467e+01 1havA b.47.1.4
1havB/YGR039W-1havB-local-adpstyle5.a2m 2.1654e+012.7467e+01 1havA b.47.1.4
1havB/YGR039W-1havB-simplesw-adpstyle1.a2m 2.1654e+012.7711e+01 1havA b.47.1.4
1havB/YGR039W-1havB-simplesw-adpstyle5.a2m 2.1654e+012.7711e+01 1havA b.47.1.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001