# List of top-scoring protein chains for t2k-100-30-str hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hf2A	210	6.22e+00	1hf2A	b.80.3.1	60992
				c.102.1.1	60993
1fjgB	256	6.40e+00	1fjfB	c.23.15.1	31400
1h2eA	207	7.12e+00			
1tmy	120	7.79e+00	1dbwA	c.23.1.1	31083
1ebbA	202	9.65e+00		c.60.1.1	64900
1kr4A	125	1.04e+01			
1j5eB	256	1.06e+01			
1sfp	114	1.12e+01	1sfp	b.23.1.1	23895
1szt	68	1.20e+01	1aikN	h.3.2.1	45725
8prkA	287	1.32e+01	1wgjA	b.40.5.1	25395
1pyp	285	1.49e+01	1wgjA	b.40.5.1	25409
1h4wA	224	1.56e+01		b.47.1.2	65622
1im5A	180	1.66e+01		c.33.1.2	66211
1rtfB	252	1.69e+01	5ptp		
1ej0A	180	1.78e+01	1ej0A	c.66.1.2	34179
1dk4A	252	2.01e+01	1dk4A	e.7.1.1	42970
1jj7A	260	2.06e+01		c.37.1.12	63114
1b4bA	71	2.17e+01	1b4aA	d.74.2.1	39718
1qa7B	217	2.29e+01	1havA	b.47.1.4	26426
1qczA	169	2.35e+01	1qczA	c.23.8.1	31276
1qa7A	217	2.40e+01	1havA	b.47.1.4	26425
1jkeA	145	2.54e+01		c.110.1.1	66791
1pmt	203	2.66e+01	1a0fA	a.45.1.1	17740
				c.47.1.5	33034
1h0xA	100	2.76e+01			
1havA	217	2.93e+01	1havA	b.47.1.4	26423
1wgjA	286	2.94e+01	1wgjA	b.40.5.1	25397
1aw9	216	3.00e+01	1gnwA	a.45.1.1	17736
				c.47.1.5	33030
1amp	291	3.00e+01	1amp	c.56.5.4	33837
8prkB	287	3.18e+01	1wgjA	b.40.5.1	25396
1qavB	115	3.26e+01	1qauA	b.36.1.1	24780
3dni	260	3.30e+01	3dni	d.151.1.1	41791
1jytA	163	3.38e+01		b.94.1.1	67489
1e9gB	286	3.69e+01	1wgjA	b.40.5.1	59394
1hd2A	161	3.78e+01		c.47.1.10	60962
1d02A	202	3.80e+01	1d02A	c.52.1.8	33313
2fmr	65	3.84e+01	2fmr	d.51.1.1	38808
1hloA	150	3.89e+01	1an4A	a.38.1.1	17128
1bhe	376	3.99e+01	1bhe	b.80.1.3	28030