# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bhe	376	6.13e+00	1bhe	b.80.1.3	28030
1hf2A	210	7.28e+00	1hf2A	b.80.3.1	60992
				c.102.1.1	60993
1fjgB	256	8.01e+00	1fjfB	c.23.15.1	31400
1j5eB	256	8.20e+00			
1tmy	120	8.80e+00	1dbwA	c.23.1.1	31083
1ebbA	202	1.49e+01		c.60.1.1	64900
1h2eA	207	1.52e+01			
1qczA	169	1.61e+01	1qczA	c.23.8.1	31276
1h4wA	224	1.89e+01		b.47.1.2	65622
1kr4A	125	1.91e+01			
8prkA	287	1.98e+01	1wgjA	b.40.5.1	25395
1jytA	163	2.06e+01		b.94.1.1	67489
1pyp	285	2.30e+01	1wgjA	b.40.5.1	25409
1im5A	180	2.32e+01		c.33.1.2	66211
1szt	68	2.33e+01	1aikN	h.3.2.1	45725
1ifc	132	2.35e+01		b.60.1.2	27173
1jkeA	145	2.80e+01		c.110.1.1	66791
1sfp	114	2.81e+01	1sfp	b.23.1.1	23895
1hq0A	295	2.97e+01	1hzgA	d.194.1.1	61122
1hzgA	295	2.98e+01	1hzgA	d.194.1.1	61436
1d5rA	324	3.06e+01	1d5rA	b.7.1.1	23181
				c.45.1.1	32697
1jj7A	260	3.10e+01		c.37.1.12	63114
1c1kA	217	3.19e+01	1c1kA	a.120.1.1	19239
1lzjA	292	3.30e+01			
1tx4A	198	3.39e+01	1tx4A	a.116.1.1	19098
1d02A	202	3.48e+01	1d02A	c.52.1.8	33313
1e9gA	286	3.50e+01	1wgjA	b.40.5.1	59393
1wgjA	286	3.64e+01	1wgjA	b.40.5.1	25397
1a8p	258	3.82e+01	1fdr	b.43.4.2	25654
				c.25.1.1	31544
1rtfB	252	3.89e+01	5ptp		
1b4bA	71	3.98e+01	1b4aA	d.74.2.1	39718