# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fjgB	256	1.38e+00	1fjfB	c.23.15.1	31400
1j5eB	256	2.37e+00			
1pyp	285	3.08e+00	1wgjA	b.40.5.1	25409
1h2eA	207	3.26e+00			
8prkB	287	3.89e+00	1wgjA	b.40.5.1	25396
1e9gB	286	4.15e+00	1wgjA	b.40.5.1	59394
1wgjA	286	4.45e+00	1wgjA	b.40.5.1	25397
1e9gA	286	4.50e+00	1wgjA	b.40.5.1	59393
8prkA	287	4.61e+00	1wgjA	b.40.5.1	25395
1hf2A	210	4.62e+00	1hf2A	b.80.3.1	60992
				c.102.1.1	60993
1kr4A	125	4.70e+00			
1ebbA	202	4.71e+00		c.60.1.1	64900
1bhe	376	4.88e+00	1bhe	b.80.1.3	28030
1pdnC	128	5.04e+00	6paxA	a.4.1.5	16047
1tmy	120	8.06e+00	1dbwA	c.23.1.1	31083
1c1kA	217	8.19e+00	1c1kA	a.120.1.1	19239
3sil	379	8.95e+00	3sil	b.68.1.1	27542
1dim	381	9.92e+00	3sil	b.68.1.1	27544
1b4bA	71	1.00e+01	1b4aA	d.74.2.1	39718
1qczA	169	1.00e+01	1qczA	c.23.8.1	31276
1jobA	162	1.01e+01	1f35A	b.94.1.1	63207
1f35A	162	1.03e+01	1f35A	b.94.1.1	59628
2sil	381	1.06e+01	3sil	b.68.1.1	27543
1gg3A	279	1.08e+01	1ef1A	a.11.2.1	16372
				b.55.1.5	27007
				d.15.1.4	37615
1jytA	163	1.13e+01		b.94.1.1	67489
1amp	291	1.17e+01	1amp	c.56.5.4	33837
1b5tA	275	1.19e+01	1b5tA	c.1.23.1	29676
1d5rA	324	1.28e+01	1d5rA	b.7.1.1	23181
				c.45.1.1	32697
1tx4A	198	1.51e+01	1tx4A	a.116.1.1	19098
1h0xA	100	1.55e+01			
1cyo	93	1.56e+01	1cyo	d.120.1.1	41065
2bvwA	362	1.63e+01	1bvwA	c.6.1.1	30666
1h4wA	224	1.89e+01		b.47.1.2	65622
1rtfB	252	1.95e+01	5ptp		
1lqxA	82	2.08e+01			
1bolA	222	2.09e+01	1bolA	d.124.1.1	41120
1mgsA	73	2.14e+01	1tvxA	d.9.1.1	37389
1k8wA	327	2.24e+01		d.58.35.2	68317
				d.58.35.2	68318
1cr5A	189	2.24e+01	1cr5A	b.52.2.3	26931
				d.31.1.1	38465
1bvwA	360	2.29e+01	1bvwA	c.6.1.1	30668
1h7zA	194	2.48e+01	1qhvA	b.21.1.1	60733
1rlaA	323	2.76e+01	1d3vA	c.42.1.1	32561
1ej0A	180	2.84e+01	1ej0A	c.66.1.2	34179
1sfp	114	2.84e+01	1sfp	b.23.1.1	23895
1egpA	45	2.88e+01	1egpA	d.40.1.1	38561
1rrpB	134	2.98e+01	1rrpB	b.55.1.3	26995
1an2A	86	3.02e+01	1an2A	a.38.1.1	17130
1hloA	150	3.03e+01	1an4A	a.38.1.1	17128
1fbtA	190	3.08e+01	1bif	c.60.1.4	34004
1awqA	164	3.10e+01	2cpl	b.62.1.1	27461
4gr1	478	3.15e+01	3grs	c.3.1.5	30461
				c.3.1.5	30462
				d.87.1.1	40162
1cwoA	165	3.30e+01	2cpl	b.62.1.1	27445
1im5A	180	3.49e+01		c.33.1.2	66211
2cpl	165	3.66e+01	2cpl	b.62.1.1	27420
1dl5A	317	3.83e+01	1dl5A	c.66.1.7	64720
				d.197.1.1	64721
2eiaB	206	3.96e+01	1eia	a.28.3.1	16950
				a.73.1.1	18330
1edqA	540	3.98e+01	1ctn	b.1.1.5	21873
				c.1.8.5	29002
				d.26.3.1	38436