SAM_T02 Results for YGR038W (ORM1)

YGR038W (ORM1) SGDID:S0003270, Chr VII from 560676-561344

Description Link to file Date
Inputs
Submitted sequence(s) YGR038W.a2m 2002 Nov 3 7:35:52
SAM_T02 multiple alignment in a2m format YGR038W.t2k.a2m.gz 2002 Nov 3 7:42:40
SAM_T02 multiple alignment in pretty html format YGR038W.t2k.pa.html 2002 Nov 3 7:42:40
SAM_T02 target hidden Markov model YGR038W.t2k-w0.5.mod 2002 Nov 3 7:42:42
SAM_T02 multiple alignment in sequence logo format YGR038W.t2k.w0.5-logo.eps 2002 Nov 12 4:31:47
Secondary Structure Prediction
Str structure prediction RDB format YGR038W.t2k.str.rdb 2002 Nov 3 7:42:42
Str structure prediction sequence format YGR038W.t2k.str.seq 2002 Nov 3 7:42:42
Str structure prediction in sequence logo format YGR038W.t2k.str-logo.eps 2002 Nov 3 7:42:43
DSSP EBGHSTL structure prediction RDB format YGR038W.t2k.dssp-ebghstl.rdb 2002 Nov 3 7:42:44
DSSP EBGHSTL structure prediction sequence format YGR038W.t2k.dssp-ebghstl.seq 2002 Nov 3 7:42:44
DSSP EBGHSTL structure prediction in sequence logo format YGR038W.t2k.dssp-ebghstl-logo.eps 2002 Nov 3 7:42:44
Stride EBGHTL structure prediction RDB format YGR038W.t2k.stride-ebghtl.rdb 2002 Nov 3 7:42:45
Stride EBGHTL structure prediction sequence format YGR038W.t2k.stride-ebghtl.seq 2002 Nov 3 7:42:44
Stride EBGHTL structure prediction in sequence logo format YGR038W.t2k.stride-ebghtl-logo.eps 2002 Nov 3 7:42:45
Alpha angle prediction RDB format YGR038W.t2k.alpha.rdb 2002 Nov 3 7:42:45
Alpha angle prediction sequence format YGR038W.t2k.alpha.seq 2002 Nov 3 7:42:45
Alpha angle prediction in sequence logo format YGR038W.t2k.alpha-logo.eps 2002 Nov 3 7:42:46
DSSP 3-value prediction RDB format YGR038W.t2k.dssp-ehl2.rdb 2002 Nov 3 7:42:46
DSSP-EHL2 structure prediction CASP format YGR038W.t2k.dssp-ehl2 2002 Nov 3 7:42:46
DSSP 3-value prediction in sequence logo format YGR038W.t2k.dssp-ehl2-logo.eps 2002 Nov 3 7:42:47
Target model scores
Annotated amino acid single-track target model scores of PDB YGR038W.t2k-w0.5-scores.html 2002 Nov 3 7:48:36
Annotated amino acid/100-30-str two-track target model scores YGR038W.t2k-100-30-str-scores.html 2002 Nov 12 4:34:23
Annotated amino acid/100-30-dssp-ebghstl two-track target model scores YGR038W.t2k-100-30-dssp-ebghstl-scores.html 2002 Nov 12 4:36:57
Annotated amino acid/100-30-stride-ebghtl two-track target model scores YGR038W.t2k-100-30-stride-ebghtl-scores.html 2002 Nov 12 4:39:30
Annotated amino acid/100-30-alpha two-track target model scores YGR038W.t2k-100-30-alpha-scores.html 2002 Nov 12 4:42:04
Annotated amino acid/100-30-dssp-ehl2 two-track target model scores YGR038W.t2k-100-30-dssp-ehl2-scores.html 2002 Nov 12 4:44:36
Template model scores
Annotated template model scores YGR038W.template-lib-scores.html 2002 Nov 12 4:51:46
Top Hits
Best scoring hits from all models YGR038W.t2k.best-scores.html 2002 Nov 12 4:51:47
Alignments for Top Hits
T02 Many Alignments Summary YGR038W.t2k.many_alignments.html 2002 Nov 12 4:51:57
T02 Top Models Summary YGR038W.t2k.top_reported_alignments.html 2002 Dec 29 12:11:10
Undertaker (3d) files
Script for dssp coloring in rasmol YGR038W.t2k.dssp-color.rasmol 2002 Nov 3 7:42:44
Script for stride coloring in rasmol YGR038W.t2k.stride-color.rasmol 2002 Nov 3 7:42:45
Script for str coloring in rasmol YGR038W.t2k.str-color.rasmol 2002 Nov 3 7:42:43
Script for alpha coloring in rasmol YGR038W.t2k.alpha-color.rasmol 2002 Nov 3 7:42:46
Multiple alignment for undertaker templates YGR038W.t2k-2track-undertaker.a2m 2002 Dec 29 12:13:49
Undertaker input for top alignments YGR038W.t2k.undertaker-align.under 2002 Dec 29 12:13:49
PDB file with models for top alignments YGR038W.t2k.undertaker-align.pdb.gz 2002 Dec 29 12:14:28
Fragment list for undertaker (from fragfinder) YGR038W.t2k.frag.gz 2002 Nov 3 8:28:28

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001

SAM_T02 web system designed by Rachel Karchin and Kevin Karplus

rachelk@soe.ucsc.edu
karplus@soe.ucsc.edu