(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • YGR038W ORM1 SGDID:S0003270, Chr VII from 560676-561344
    • gi|6321475|ref|NP_011552.1|_1:222 (NC_001139) Product of gene unknown; Orm1p [Saccharomyces cerevisiae]
    • gi|1723661sp|P53224|ORM1_YEAST ORM1 PROTEIN
    • gi|2132590|pir||S64329 probable membrane protein YGR038w - yeast (Saccharomyces cerevisiae)
    • gi|1323023|emb|CAA97026.1| (Z72823) ORF YGR038w [Saccharomyces cerevisiae]
    • gi|6323382|ref|NP_013454.1|_1:216 (NC_001144) Homologous to ORM1.; Orm2p [Saccharomyces cerevisiae]
    • gi|1077380|pir||S51352 probable membrane protein YLR350w - yeast (Saccharomyces cerevisiae)
    • gi|609381|gb|AAB67252.1| (U19028) Ylr350wp [Saccharomyces cerevisiae]
    • gi|1620462|emb|CAA69945.1|_2:148 (Y08688) ORM1 [Saccharomyces monacensis]
    • gi|1620453|emb|CAA69943.1|_2:148 (Y08687) ORM1 [Saccharomyces cerevisiae]
    • gi|19112082|ref|NP_595290.1|_6:171 (NC_003423) hypothetical protein; similar to S. cerevisiae YGR038W; contains 3 predicted transmembrane helices [Schizosaccharomyces pombe]
    • gi|7491321|pir||T39307 hypothetical protein SPBC119.09c - fission yeast (Schizosaccharomyces pombe)
    • gi|2959370|emb|CAA17924.1| (AL022117) hypothetical protein; similar to S. cerevisiae YGR038W; contains 3 predicted transmembrane helices [Schizosaccharomyces pombe]
    • gi|20557519|ref|XP_058830.2|_8:151 (XM_058830) similar to ORMDL3 [Homo sapiens]
    • gi|21165608|gb|AAM43507.1|AF395708_1 (AF395708) ORMDL3 [Homo sapiens]
    • gi|22760500|dbj|BAC11223.1| (AK074811) unnamed protein product [Homo sapiens]
    • gi|22761156|dbj|BAC11476.1| (AK075212) unnamed protein product [Homo sapiens]
    • gi|13385128|ref|NP_079937.1|_8:151 (NM_025661) ORM1-like 3; expressed sequence AI315223 [Mus musculus]
    • gi|12844527|dbj|BAB26397.1| (AK009621) data source:SPTR, source key:Q9P0S3, evidence:ISS~homolog to HSPC202 (HYPOTHETICAL 17.4 KDA PROTEIN)~putative [Mus musculus]
    • gi|12849654|dbj|BAB28432.1| (AK012718) data source:SPTR, source key:Q9P0S3, evidence:ISS~homolog to HSPC202 (HYPOTHETICAL 17.4 KDA PROTEIN)~putative [Mus musculus]
    • gi|21165606|gb|AAM43506.1|AF395707_1_8:151 (AF395707) ORMDL2 [Homo sapiens]
    • gi|21313282|ref|NP_077142.1|_8:151 (NM_024180) ORM1-like 2 [Mus musculus]
    • gi|12805353|gb|AAH02146.1| (BC002146) Similar to HSPC160 protein [Mus musculus]
    • gi|12832673|dbj|BAB22207.1| (AK002583) data source:SPTR, source key:Q9P004, evidence:ISS~homolog to HSPC160~putative [Mus musculus]
    • gi|12850822|dbj|BAB28864.1| (AK013455) data source:SPTR, source key:Q9P004, evidence:ISS~homolog to HSPC160~putative [Mus musculus]
    • gi|7661820|ref|NP_054901.1|_8:151 (NM_014182) ORMDL2 [Homo sapiens]
    • gi|6841542|gb|AAF29124.1|AF161509_1 (AF161509) HSPC160 [Homo sapiens]
    • gi|15214814|gb|AAH12543.1|AAH12543 (BC012543) Similar to HSPC160 protein [Homo sapiens]
    • gi|21165602|gb|AAM43504.1|AF395705_1 (AF395705) ORMDL2 [Homo sapiens]
    • gi|21165604|gb|AAM43505.1|AF395706_1 (AF395706) ORMDL2 [Homo sapiens]
    • gi|22761808|dbj|BAC11712.1| (AB064961) adoplin-2 [Homo sapiens]
    • gi|21704018|ref|NP_663492.1|_8:151 (NM_145517) similar to hypothetical protein LOC51240 [Mus musculus]
    • gi|15126791|gb|AAH12315.1| (BC012315) Similar to hypothetical protein [Mus musculus]
    • gi|19343667|gb|AAH25572.1| (BC025572) Unknown (protein for MGC:36598) [Mus musculus]
    • gi|23274058|gb|AAH23695.1| (BC023695) similar to hypothetical protein LOC51240 [Mus musculus]
    • gi|7706009|ref|NP_057551.1|_8:151 (NM_016467) hypothetical protein LOC51240 [Homo sapiens]
    • gi|7106794|gb|AAF36122.1|AF151036_1 (AF151036) HSPC202 [Homo sapiens]
    • gi|13528801|gb|AAH05200.1|AAH05200 (BC005200) hypothetical protein [Homo sapiens]
    • gi|21165598|gb|AAM43502.1| (AF395702) ORMDL1 [Homo sapiens]
    • gi|21165600|gb|AAM43503.1|AF395704_1 (AF395704) ORMDL1 [Homo sapiens]
    • gi|22760406|dbj|BAC11184.1| (AK074756) unnamed protein product [Homo sapiens]
    • gi|22761069|dbj|BAC11441.1| (AK075160) unnamed protein product [Homo sapiens]
    • gi|22761804|dbj|BAC11710.1| (AB064959) adoplin-1 [Homo sapiens]
    • gi|22761806|dbj|BAC11711.1| (AB064960) adoplin-1 [Homo sapiens]
    • gi|22204217|emb|CAD43469.1|_8:151 (AL591593) SI:dZ211O13.2 (novel protein) [Danio rerio]
    • gi|22204385|emb|CAD43441.1| (AL672217) SI:dZ72B14.3 (novel protein) [Danio rerio]
    • gi|18378814|ref|NP_563622.1|_12:155 (NM_100006) expressed protein; protein id: At1g01230.1, supported by cDNA: 13874., supported by cDNA: gi_13430649 [Arabidopsis thaliana]
    • gi|13430650|gb|AAK25947.1|AF360237_1 (AF360237) unknown protein [Arabidopsis thaliana]
    • gi|14532824|gb|AAK64094.1| (AY040036) unknown protein [Arabidopsis thaliana]
    • gi|23680526|ref|XP_177015.1|_8:159 (XM_177015) similar to ORM1-like 3; expressed sequence AI315223 [Mus musculus]
    • gi|12841163|dbj|BAB25101.1|_2:135 (AK007548) data source:SPTR, source key:Q9P004, evidence:ISS~homolog to HSPC160~putative [Mus musculus]
    • gi|15238262|ref|NP_199015.1|_9:152 (NM_123565) putative protein; protein id: At5g42000.1 [Arabidopsis thaliana]
    • gi|9757945|dbj|BAB08433.1| (AB017067) gene_id:MJC20.10~pir||T39307~similar to unknown protein [Arabidopsis thaliana]
    • gi|12849592|dbj|BAB28407.1|_2:135 (AK012681) data source:SPTR, source key:Q9P004, evidence:ISS~homolog to HSPC160~putative [Mus musculus]
    • gi|20825849|ref|XP_132026.1|_8:151 (XM_132026) similar to RIKEN cDNA 0610012C09 [Mus musculus]
    • gi|21297820|gb|EAA09965.1|_28:172 (AAAB01008933) agCP11861 [Anopheles gambiae str. PEST]
    • gi|7296472|gb|AAF51758.1|_9:152 (AE003595) CG14577-PA [Drosophila melanogaster]
    • gi|1842140|dbj|BAA19218.1|_2:135 (AB001024) similar to Saccharomyces cerevisiae ORM1 gene: EMBL Accession Number Y08687 [Schizosaccharomyces pombe]
    • gi|9665157|gb|AAF97341.1|AC023628_22_12:147 (AC023628) Unknown protein [Arabidopsis thaliana]
    • gi|21165594|gb|AAM43501.1|AF395703_1_2:127 (AF395703) ORMDL [Drosophila melanogaster]
    • gi|19074915|ref|NP_586421.1|_2:145 (NC_003237) similarity to MEMBRANE PROTEIN ORM1 [Encephalitozoon cuniculi]
    • gi|19069640|emb|CAD26025.1| (AL590450) similarity to MEMBRANE PROTEIN ORM1 [Encephalitozoon cuniculi]
    • gi|18419644|gb|AAL69388.1|AF462225_1_2:100 (AF462225) unknown [Narcissus pseudonarcissus]
    • gi|20071383|gb|AAH26412.1|_2:90 (BC026412) Unknown (protein for IMAGE:4217197) [Mus musculus] 
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MTELDYQGTAEAASTSYSRNQTDLKPFPSAGSASSSIKTTEPVKDHRRRRSSSIISHVEPETFED
   2 MTELDYQGTAEAASTSYSRNQTDLKPFPSAGSASSSIKTTEPVKDHRRRRSSSIISHVEPETFED
   3 MIDRTKNESPAFEESPLTPNVSNLKPFPS-----QSNKISTPVTDHRRRRSSSVISHVEQETFED
   4 -----------------------------------------------------------------
   5 -----------------------------------------------------------------
   6 ----------------------------------------------SRRRSSSLVTKVPKPTIDD
   7 -----------------------------------------------------------------
   8 -----------------------------------------------------------------
   9 -----------------------------------------------------------------
  10 -----------------------------------------------------------------
  11 -----------------------------------------------------------------
  12 -----------------------------------------------------------------
  13 -----------------------------------------------------------------
  14 -----------------------------------------------------------------
  15 -----------------------------------------------------------------
  16 -----------------------------------------------------------------
  17 -----------------------------------------------------------------
  18 -----------------------------------------------------------------
  19 -----------------------------------------------------------------
  20 -----------------------------------------------------------------
  21 -----------------------------------------------------------------
  22 -----------------------------------------------------------------
  23 -----------------------------------------------------------------
  24 -----------------------------------------------------------------
  25 -----------------------------------------------------------------
  26 ---------------------------------------------------------------AG
  27 -----------------------------------------------------------------
  28 -----------------------------------------------------------------


         70        80             90       100       110       120     
         |         |              |         |         |         |     
   1 ENDQQLLPNMNATWVDQRGAWI.....IHVVIIILLKLFYNLFPGVTTEWSWTLTNMTYVIGSYV
   2 ENDQQLLPNMNATWVDQRGAWI.....IHVVIIILLKLFYNLFPGVTTEWSWTLTNMTYVIGSYV
   3 ENDQQMLPNMNATWVDQRGAWL.....IHIVVIVLLRLFYSLF-GSTPKWTWTLTNMTYIIGFYI
   4 ----------NATWVDQRGAWI.....IHVVVITLLKLFFNLFPGVTAEWSWTLTNMTYVVGSYV
   5 ----------NATWVDQRGAWI.....IHVVIIILLKLFYNLFPGVTTEWSWTLTNMTYVIGSYV
   6 RLDQGSATNYNSNWVNYKGAWV.....IHIVLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFI
   7 -----SEVNPNTRVMNSRGIWL.....SYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYI
   8 -----SEVNPNTRVMNSRGIWL.....SYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYI
   9 -----SEVNPNTRVMNSRGIWL.....AYIILVGLLHMVLLSIPFFSIPVVWTLTNVIHNLATYV
  10 -----SEVNPNTRVMNSRGIWL.....AYIILVGLLHVVLLSIPFFSIPVVWTLTNVIHNLAMYI
  11 -----SEVNPNTRVMNSRGIWL.....AYIILVGLLHMVLLSIPFFSIPVVWTLTNVIHNLATYV
  12 -----SEVNPNTRVMNSRGMWL.....TYALGVGLLHIVLLSIPFCSVPVAWTLTNIIHNLGMYV
  13 -----SEVNPNTRVMNSRGMWL.....TYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGMYV
  14 -----SEVNPNTRVMNSRGIWL.....TYALGVGMLHIVLLSIPFFSVPVVWTLTNVIHNFGMYV
  15 -----PDMNRNTEWFMYPGVWT.....TYMLILFFGWLVVLSVSGCSPGMAWTVVNLAHFVVTYH
  16 -----SEVNPNTWVMNSRGIWLsy8wlSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYV
  17 ---------------NSRGIWL.....AYIILVGLLHVVLLSIPFFSIPVVWTLTNVIHNLAMYI
  18 -----TDVNRNTEWFTYPGVWT.....TYILILFFSWLLVLSVFHCSPGIAWTIVHLAHFTVTYH
  19 ---------------NSRGIWL.....AYIILVGLLHVVPLSIPFFSIPVVWTLTNVIHNLAMYI
  20 -----SEVNPNTLVMNSLGIWL.....AYIISVGLLHVVLLSIPFFSIPVIWTLTNVIHNLAMYI
  21 ----NGDPNPNASWLDSRGLWL.....AYVLGITIFHIVLLAIPFVQIPYAWTITNIAHNLAHLY
  22 -----GEANPNSSWLSARGFWL.....AYLLGLLSVHLLFLSVPFVSIPWAWTATNLLHNAAHLY
  23 -------------WVNHKGAWV.....IHIVLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFI
  24 -----PDMNRNTEWFMYPGVWT.....TYMLILFFGWLVVLSVSGCSPGMAWTVVNLAHFVVTYH
  25 ------EANPNSSWLSARGFWL.....AYLLGLLSVHLLFLSVPFVSIPWAWTATNLLHNAAHLY
  26 DKERKVDVSQNVAWTLQRGSWI.....IHVLVILLLKMTLSMA--FNDDLGWQLALVIYNISTFI
  27 ----------------------.....----------------------------NLSHFAVTYH
  28 ----------------------.....--------------------------------------


        130        140       150       160       170       180       19
         |          |         |         |         |         |         
   1 MFHLIKGTPFD.FNGGAYDNLTMWEQIDDETLYTPSRKFLISVPIALFLVSTHYAHYDLKLFSWN
   2 MFHLIKGTPFD.FNGGAYDNLTMWEQIDDETLYTPSRKFLISVPIALFLVSTHYAHYDLKLFSWN
   3 MFHLVKGTPFD.FNGGAYDNLTMWEQINDETLYTPTRKFLLIVPIVLFLISNQYYRNDMTLFLSN
   4 MFHLIKGTPFD.FNGGAYDNLTMWEQIDDETLFTPSRKFLIIVPIALFLVSTHYAHYDLKMFSWN
   5 MFHLIKGTPFD.FNGGAYDNLTMWEQIDDETLYTPSRKFLISVPIALFLVSTHYAHYDLKLFSWN
   6 MFHWVTGTPFE.FNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFLMSTHYTHYNGWMFLVN
   7 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQIHFVLN
   8 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILN
   9 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLIN
  10 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLIN
  11 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLIN
  12 FLHAVKGTPFEtPDQGRARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFILN
  13 FLHAVKGTPFEtPDQGKARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFILN
  14 FMHAVKGTPFEtPDQGKARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDTAHFVIN
  15 SFHWMKGTPFA.DDQGIYNGLTWWEQMDNGQQLTRNRKFLTLVPVVLYLIASHTTDYRHPWLFLN
  16 FLHTVKGTPFEtPDQGKARLLTHWEQMDHEVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILN
  17 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLIN
  18 SFHWKKGTPFG.DDQGVYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLN
  19 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYDAAHFLIN
  20 FPHTVKGTPFEtPDQGKGQLLTHWGQMDYGLQFTSSRKFLSISPIILYLLASFYTKCDAAHFLIN
  21 FLHCIKGAPWMsIDAGENRKYTHWEQINSGEQLTTTRKFLTAAPIVLFLLTCLYTRNDIDHFIVN
  22 FLHVIKGAPWLsTENDPSRRWTHWEQIDDGVQMTTTRKFLTAVPIVLFLLTCLYTRNNTEHFIPN
  23 MFHWVTGTPFE.FNGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFLMSTHYTHYNGWMFLVN
  24 SFHWMKGTPFA.DDQGIYNGLTWWEQMDNGQQLTRNRKFLTLVPVVLYLIASHTTDYRHPWLFLN
  25 FLHVIKGAPWLsTENDPSRRWTHWEQIDDGVQMTTTRKFLTAVPIVLFLLTCLYTRNNTEHFIPN
  26 FFHMIPGDPF-.--NDRYSLYTFWEQLSEQLEGTPDLIFIALFPLIAFTAVNFIVKWNIFLF-WI
  27 FFHWKKGTPFG.EDQGIYRALTWWEQMDDGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLLLN
  28 FLHTVKGTPFEtPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQVHFILN


      0       200       210       220  
     |         |         |         |  
   1 CFLTTFGAVVPKLPVTHRLRISIPGITGRAQIS
   2 CFLTTFGAVVPKLPVTHRLRISIPGITGRAQIS
   3 LAVTVLIGVVPKLGITHRLRISIPGITGRAQIS
   4 CFLTTFVAVVPKLPVTHRLRISIPGITGRAQIS
   5 CFLTTFGAVVPKLPVTHRLRISIPGITGRAQIS
   6 -IWALFMVLIPKLPAVHRKRI--FGI-------
   7 -TVSLMSVLIPKLPQLHGVRI--FGIN------
   8 -TVSLMTVLIPKLPQLHGVRI--FGIN------
   9 -TASLLSVLLPKLPQFHRVRV--FGIN------
  10 -TASLLSVLLPKLPQFHGVRL--FGIN------
  11 -TASLLSVLLPKLPQFHGVRV--FGIN------
  12 -TASLLSVLIPKMPQLHGVRI--FGIN------
  13 -TASLLSVLIPKMPQLHGVRI--FGIN------
  14 -TASLLSVLIPKLPQLHGVRI--FGIN------
  15 -TLAVMVLVVAKFPNMHKVRI--FGING-----
  16 -TVSLMTVLMPKFPQLHGVRI--FGIN------
  17 -TASLLSVLLPKLPQFHGVRL--FGIN------
  18 -TLAVFVMVVAKFPHMHKVRI--FGING-----
  19 -TASLLSVLLPKLPQFHGVRL--FGIN------
  20 -TASLLSMLLPKLPQFHGVHL--FGIN------
  21 -FISLVVVLVPKLPQFHGVRL--FGIN------
  22 -FISLVVVTLPKLPQFHGVRL--FNIN------
  23 -IWALFMVLIPKLPAVHRKRI--FGI-------
  24 -TLAVMVLVVAKFPNMHK---------------
  25 -FISLVVV-------------------------
  26 CITSLFLVTIPKFGFMHLRRILIF---------
  27 -TLAVFILVVAKLPNMHKVRI--FGING-----
  28 -TVSLMTVLIPKLPQLHGVRI--FGIN------