Best Alignments for YGR038W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1dxrM/YGR038W-1dxrM-global-str-1.5-adpstyle5.a2m 3.9352e+008.3877e-02 6prcM f.2.1.2
6prcM/YGR038W-6prcM-global-str-1.5-adpstyle5.a2m 4.1596e+001.1218e-01 6prcM f.2.1.2
1dxrM/YGR038W-1dxrM-local-str-1.5-adpstyle5.a2m 3.9352e+003.7248e-01 6prcM f.2.1.2
6prcM/YGR038W-6prcM-local-str-1.5-adpstyle5.a2m 4.1596e+005.8625e-01 6prcM f.2.1.2
1dxrM/6prcM-YGR038W-fssp-global-adpstyle5.a2m 3.9352e+008.1462e-01 6prcM f.2.1.2
6prcM/6prcM-YGR038W-fssp-global-adpstyle5.a2m 4.1596e+008.5315e-01 6prcM f.2.1.2
1is2A/YGR038W-1is2A-global-str-1.5-adpstyle5.a2m 4.6764e+008.7378e-01
2at9/YGR038W-2at9-local-str-1.5-adpstyle5.a2m 3.4368e+009.1576e-01 1c3wA f.2.1.1
1dms/1dmr-YGR038W-fssp-global-adpstyle5.a2m 2.6428e+001.1250e+00 1dmr b.52.2.2
c.81.1.1
1dms/1dmr-YGR038W-fssp-local-adpstyle5.a2m 2.6428e+001.2701e+00 1dmr b.52.2.2
c.81.1.1
1e18A/1dmr-YGR038W-fssp-global-adpstyle5.a2m 3.0962e+001.2837e+00 1dmr b.52.2.2
c.81.1.1
1e60A/1dmr-YGR038W-fssp-global-adpstyle5.a2m 3.1129e+001.2895e+00 1dmr b.52.2.2
c.81.1.1
4dmr/1dmr-YGR038W-fssp-global-adpstyle5.a2m 3.1630e+001.3068e+00 1dmr b.52.2.2
c.81.1.1
1dxrM/YGR038W-1dxrM-local-dssp-ebghstl-0.3-adpstyle5.a2m 3.9352e+001.3456e+00 6prcM f.2.1.2
1dxrM/YGR038W-1dxrM-global-str-0.3-adpstyle5.a2m 3.9352e+001.3832e+00 6prcM f.2.1.2
1e18A/1dmr-YGR038W-fssp-local-adpstyle5.a2m 3.0962e+001.4493e+00 1dmr b.52.2.2
c.81.1.1
1dxrM/YGR038W-1dxrM-global-stride-ebghtl-0.3-adpstyle5.a2m 3.9352e+001.4537e+00 6prcM f.2.1.2
1e60A/1dmr-YGR038W-fssp-local-adpstyle5.a2m 3.1129e+001.4558e+00 1dmr b.52.2.2
c.81.1.1
4dmr/1dmr-YGR038W-fssp-local-adpstyle5.a2m 3.1630e+001.4753e+00 1dmr b.52.2.2
c.81.1.1
6prcM/YGR038W-6prcM-global-str-0.3-adpstyle5.a2m 4.1596e+001.5039e+00 6prcM f.2.1.2
2at9/1c3wA-YGR038W-fssp-global-adpstyle5.a2m 3.4368e+001.5321e+00 1c3wA f.2.1.1
6prcM/YGR038W-6prcM-local-dssp-ebghstl-0.3-adpstyle5.a2m 4.1596e+001.5492e+00 6prcM f.2.1.2
2at9/1c3wA-YGR038W-fssp-local-adpstyle5.a2m 3.4368e+001.5883e+00 1c3wA f.2.1.1
1dxrM/6prcM-YGR038W-fssp-local-adpstyle5.a2m 3.9352e+001.6684e+00 6prcM f.2.1.2
1a7m/1lki-YGR038W-fssp-local-adpstyle5.a2m 3.6777e+001.7398e+00 1lki a.26.1.1
6prcM/6prcM-YGR038W-fssp-local-adpstyle5.a2m 4.1596e+001.7473e+00 6prcM f.2.1.2
1a7m/1lki-YGR038W-fssp-global-adpstyle5.a2m 3.6777e+001.7596e+00 1lki a.26.1.1
1dxrM/YGR038W-1dxrM-global-dssp-ebghstl-0.3-adpstyle5.a2m 3.9352e+001.7904e+00 6prcM f.2.1.2
2at9/YGR038W-2at9-local-str-0.3-adpstyle5.a2m 3.4368e+001.8095e+00 1c3wA f.2.1.1
1dxrM/YGR038W-1dxrM-local-str-0.3-adpstyle5.a2m 3.9352e+001.8595e+00 6prcM f.2.1.2
1dms/YGR038W-1dms-local-adpstyle1.a2m 2.6428e+001.9285e+00 1dmr b.52.2.2
c.81.1.1
1dms/YGR038W-1dms-local-adpstyle5.a2m 2.6428e+001.9285e+00 1dmr b.52.2.2
c.81.1.1
1dxrM/YGR038W-1dxrM-global-alpha-0.3-adpstyle5.a2m 3.9352e+001.9302e+00 6prcM f.2.1.2
2at9/YGR038W-2at9-local-dssp-ebghstl-0.3-adpstyle5.a2m 3.4368e+001.9887e+00 1c3wA f.2.1.1
6prcM/YGR038W-6prcM-global-alpha-0.3-adpstyle5.a2m 4.1596e+001.9981e+00 6prcM f.2.1.2
6prcM/YGR038W-6prcM-global-stride-ebghtl-0.3-adpstyle5.a2m 4.1596e+002.0300e+00 6prcM f.2.1.2
6prcM/YGR038W-6prcM-local-str-0.3-adpstyle5.a2m 4.1596e+002.0488e+00 6prcM f.2.1.2
6prcM/YGR038W-6prcM-global-dssp-ebghstl-0.3-adpstyle5.a2m 4.1596e+002.1711e+00 6prcM f.2.1.2
153l/153l-YGR038W-fssp-local-adpstyle5.a2m 4.9452e+002.1994e+00 153l d.2.1.5
1is2A/YGR038W-1is2A-local-str-1.5-adpstyle5.a2m 4.6764e+002.2079e+00
153l/153l-YGR038W-fssp-global-adpstyle5.a2m 4.9452e+002.2583e+00 153l d.2.1.5
1e18A/YGR038W-1e18A-local-adpstyle1.a2m 3.0962e+002.3284e+00 1dmr b.52.2.2
c.81.1.1
1e18A/YGR038W-1e18A-local-adpstyle5.a2m 3.0962e+002.3284e+00 1dmr b.52.2.2
c.81.1.1
1e60A/YGR038W-1e60A-local-adpstyle1.a2m 3.1129e+002.3430e+00 1dmr b.52.2.2
c.81.1.1
1e60A/YGR038W-1e60A-local-adpstyle5.a2m 3.1129e+002.3430e+00 1dmr b.52.2.2
c.81.1.1
4dmr/YGR038W-4dmr-local-adpstyle5.a2m 3.1630e+002.3875e+00 1dmr b.52.2.2
c.81.1.1
4dmr/YGR038W-4dmr-local-adpstyle1.a2m 3.1630e+002.3875e+00 1dmr b.52.2.2
c.81.1.1
1dms/YGR038W-1dms-global-adpstyle5.a2m 2.6428e+002.4358e+00 1dmr b.52.2.2
c.81.1.1
1dms/YGR038W-1dms-global-adpstyle1.a2m 2.6428e+002.4358e+00 1dmr b.52.2.2
c.81.1.1
1a7m/YGR038W-1a7m-local-stride-ebghtl-0.3-adpstyle5.a2m 3.6777e+002.4850e+00 1lki a.26.1.1
1a7m/YGR038W-1a7m-local-dssp-ebghstl-0.3-adpstyle5.a2m 3.6777e+002.7163e+00 1lki a.26.1.1
1a7m/YGR038W-1a7m-local-str-0.3-adpstyle5.a2m 3.6777e+002.9441e+00 1lki a.26.1.1
1e18A/YGR038W-1e18A-global-adpstyle1.a2m 3.0962e+003.0679e+00 1dmr b.52.2.2
c.81.1.1
1e18A/YGR038W-1e18A-global-adpstyle5.a2m 3.0962e+003.0679e+00 1dmr b.52.2.2
c.81.1.1
1dxrM/YGR038W-1dxrM-local-alpha-0.3-adpstyle5.a2m 3.9352e+003.1319e+00 6prcM f.2.1.2
1e60A/YGR038W-1e60A-global-adpstyle5.a2m 3.1129e+003.2139e+00 1dmr b.52.2.2
c.81.1.1
1e60A/YGR038W-1e60A-global-adpstyle1.a2m 3.1129e+003.2139e+00 1dmr b.52.2.2
c.81.1.1
4dmr/YGR038W-4dmr-global-adpstyle5.a2m 3.1630e+003.2379e+00 1dmr b.52.2.2
c.81.1.1
4dmr/YGR038W-4dmr-global-adpstyle1.a2m 3.1630e+003.2379e+00 1dmr b.52.2.2
c.81.1.1
6prcM/YGR038W-6prcM-local-stride-ebghtl-0.3-adpstyle5.a2m 4.1596e+003.2469e+00 6prcM f.2.1.2
6prcM/YGR038W-6prcM-local-alpha-0.3-adpstyle5.a2m 4.1596e+003.2751e+00 6prcM f.2.1.2
1dxrM/YGR038W-1dxrM-local-stride-ebghtl-0.3-adpstyle5.a2m 3.9352e+003.2925e+00 6prcM f.2.1.2
2at9/YGR038W-2at9-local-alpha-0.3-adpstyle5.a2m 3.4368e+003.3728e+00 1c3wA f.2.1.1
2at9/YGR038W-2at9-local-stride-ebghtl-0.3-adpstyle5.a2m 3.4368e+003.5880e+00 1c3wA f.2.1.1
1is2A/YGR038W-1is2A-local-str-0.3-adpstyle5.a2m 4.6764e+003.7923e+00
1a7m/YGR038W-1a7m-local-alpha-0.3-adpstyle5.a2m 3.6777e+003.8007e+00 1lki a.26.1.1
153l/YGR038W-153l-local-str-0.3-adpstyle5.a2m 4.9452e+003.9631e+00 153l d.2.1.5
1a7m/YGR038W-1a7m-global-str-0.3-adpstyle5.a2m 3.6777e+004.1276e+00 1lki a.26.1.1
1is2A/YGR038W-1is2A-local-stride-ebghtl-0.3-adpstyle5.a2m 4.6764e+004.1303e+00
1a7m/YGR038W-1a7m-global-alpha-0.3-adpstyle5.a2m 3.6777e+004.3521e+00 1lki a.26.1.1
153l/YGR038W-153l-local-stride-ebghtl-0.3-adpstyle5.a2m 4.9452e+004.3747e+00 153l d.2.1.5
1a7m/YGR038W-1a7m-global-dssp-ebghstl-0.3-adpstyle5.a2m 3.6777e+004.4537e+00 1lki a.26.1.1
1is2A/YGR038W-1is2A-global-adpstyle1.a2m 4.6764e+004.5194e+00
1is2A/YGR038W-1is2A-global-adpstyle5.a2m 4.6764e+004.5194e+00
153l/YGR038W-153l-local-dssp-ebghstl-0.3-adpstyle5.a2m 4.9452e+005.0058e+00 153l d.2.1.5
1is2A/YGR038W-1is2A-local-dssp-ebghstl-0.3-adpstyle5.a2m 4.6764e+005.0064e+00
2at9/YGR038W-2at9-global-stride-ebghtl-0.3-adpstyle5.a2m 3.4368e+005.2035e+00 1c3wA f.2.1.1
2at9/YGR038W-2at9-global-dssp-ebghstl-0.3-adpstyle5.a2m 3.4368e+005.2098e+00 1c3wA f.2.1.1
2at9/YGR038W-2at9-global-str-0.3-adpstyle5.a2m 3.4368e+005.2625e+00 1c3wA f.2.1.1
1is2A/YGR038W-1is2A-local-alpha-0.3-adpstyle5.a2m 4.6764e+005.9777e+00
1a7m/YGR038W-1a7m-global-stride-ebghtl-0.3-adpstyle5.a2m 3.6777e+006.2070e+00 1lki a.26.1.1
153l/YGR038W-153l-local-alpha-0.3-adpstyle5.a2m 4.9452e+006.6895e+00 153l d.2.1.5
1dms/YGR038W-1dms-simplesw-adpstyle1.a2m 2.6428e+007.1993e+00 1dmr b.52.2.2
c.81.1.1
1dms/YGR038W-1dms-simplesw-adpstyle5.a2m 2.6428e+007.1993e+00 1dmr b.52.2.2
c.81.1.1
1a7m/YGR038W-1a7m-local-adpstyle1.a2m 3.6777e+007.3535e+00 1lki a.26.1.1
1a7m/YGR038W-1a7m-local-adpstyle5.a2m 3.6777e+007.3535e+00 1lki a.26.1.1
2at9/YGR038W-2at9-global-alpha-0.3-adpstyle5.a2m 3.4368e+007.7156e+00 1c3wA f.2.1.1
1dxrM/YGR038W-1dxrM-global-adpstyle1.a2m 3.9352e+007.8182e+00 6prcM f.2.1.2
1dxrM/YGR038W-1dxrM-global-adpstyle5.a2m 3.9352e+007.8182e+00 6prcM f.2.1.2
6prcM/YGR038W-6prcM-global-adpstyle5.a2m 4.1596e+008.1880e+00 6prcM f.2.1.2
6prcM/YGR038W-6prcM-global-adpstyle1.a2m 4.1596e+008.1880e+00 6prcM f.2.1.2
153l/153l-YGR038W-local-adpstyle1.a2m 4.9452e+008.3181e+00 153l d.2.1.5
153l/153l-YGR038W-local-adpstyle5.a2m 4.9452e+008.3181e+00 153l d.2.1.5
1e18A/YGR038W-1e18A-simplesw-adpstyle1.a2m 3.0962e+008.3833e+00 1dmr b.52.2.2
c.81.1.1
1e18A/YGR038W-1e18A-simplesw-adpstyle5.a2m 3.0962e+008.3833e+00 1dmr b.52.2.2
c.81.1.1
1e60A/YGR038W-1e60A-simplesw-adpstyle5.a2m 3.1129e+008.4325e+00 1dmr b.52.2.2
c.81.1.1
1e60A/YGR038W-1e60A-simplesw-adpstyle1.a2m 3.1129e+008.4325e+00 1dmr b.52.2.2
c.81.1.1
4dmr/YGR038W-4dmr-simplesw-adpstyle1.a2m 3.1630e+008.5454e+00 1dmr b.52.2.2
c.81.1.1
4dmr/YGR038W-4dmr-simplesw-adpstyle5.a2m 3.1630e+008.5454e+00 1dmr b.52.2.2
c.81.1.1
1a7m/YGR038W-1a7m-simplesw-adpstyle5.a2m 3.6777e+009.7540e+00 1lki a.26.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001