# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2at9 247 5.48e-02 1c3wA f.2.1.1 43427 1a7m 180 1.75e-01 1lki a.26.1.1 16830 6prcM 323 5.38e-01 6prcM f.2.1.2 43435 1dxrM 323 6.05e-01 6prcM f.2.1.2 43432 1ehkA 562 8.01e-01 1ehkA f.2.1.3 43624 1lki 180 8.44e-01 1lki a.26.1.1 16829 1m0kA 262 8.55e-01 1dzlA 505 1.29e+00 1dzlA b.10.1.4 23586 2pvaA 345 1.75e+00 3pvaA d.153.1.3 41850 1kgbA 231 1.75e+00 f.2.1.1 68581 3pvaA 335 1.88e+00 3pvaA d.153.1.3 41854 1is2A 661 1.92e+00 153l 185 2.21e+00 153l d.2.1.5 36984 1aw0 72 2.35e+00 1aw0 d.58.17.1 39342 1c3wA 222 2.73e+00 1c3wA f.2.1.1 43405 1auk 489 2.89e+00 1auk c.76.1.2 35030 1inp 400 4.37e+00 1inp e.7.1.1 42972 1qaxA 428 4.48e+00 1qaxA d.58.20.1 39376 d.179.1.1 42597 1bgc 174 4.51e+00 1bgc a.26.1.1 16822 1cd9C 175 4.70e+00 1bgc a.26.1.1 16816 1gm0A 142 5.38e+00 a.39.2.1 65297 1dqeA 137 6.47e+00 1dqeA a.39.2.1 17388 1tdj 514 9.54e+00 1tdj c.79.1.1 35297 d.58.18.2 39356 d.58.18.2 39357 2pth 193 1.00e+01 2pth c.56.3.1 33793 1fg9C 245 1.01e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1konA 249 1.09e+01 1ycqA 107 1.26e+01 1ycqA a.42.1.1 17419 1cfr 285 1.38e+01 1cfr c.52.1.7 33312 1uok 558 1.39e+01 1uok b.71.1.1 27801 c.1.8.1 28788 1ig8A 486 1.49e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1knvA 293 1.49e+01 c.52.1.7 68707 1bgeB 175 1.63e+01 1bgc a.26.1.1 16824 1brd 248 1.73e+01 1c3wA f.2.1.1 43404 1jf9A 408 1.74e+01 1c0nA c.67.1.3 62931 1edoA 244 1.83e+01 1ybvA c.2.1.2 29896 2a3dA 73 1.89e+01 2a3dA k.9.1.1 46424 1neu 124 2.26e+01 1neu b.1.1.1 19704 1dx7A 48 2.56e+01 1dx7A f.3.1.1 43741 1gbs 185 2.76e+01 153l d.2.1.5 36986 1aim 215 2.90e+01 1cs8A d.3.1.1 37044 1jo5A 48 2.94e+01 f.3.1.1 66988 1dkqA 410 2.95e+01 1dklA c.60.1.3 33998 1c0nA 406 2.97e+01 1c0nA c.67.1.3 34433 1eqfA 280 3.16e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 2mtaC 147 3.28e+01 2mtaC a.3.1.1 15908 1f2aA 215 3.40e+01 1cs8A d.3.1.1 37040 1fgyA 127 3.48e+01 1faoA b.55.1.1 26976 2fua 215 3.54e+01 2fua c.74.1.1 34977 1adjA 421 3.72e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1dklA 410 3.74e+01 1dklA c.60.1.3 33996 1a16 440 3.83e+01 1az9 c.55.2.1 33548 d.127.1.1 41165 5csmA 256 3.92e+01 5csmA a.130.1.2 19494 1csmA 256 3.94e+01 5csmA a.130.1.2 19495 1az9 457 3.95e+01 1az9 c.55.2.1 33547 d.127.1.1 41164 1jwhA 337 3.95e+01