% SAM: /projects/compbio/bin/i686/hmmscore v3.4 (July 31, 2003) compiled 09/03/03_16:30:36 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % w0.5foo.1.YGR038C-B.t2k-w0.5.mod Host: cc55 Mon Nov 17 19:42:56 2003 % karplus Dir: /projects/compbio/experiments/protein-predict/yeast/YGR0/YGR038C-B % --------------------------------------------------------------------- % Inserted Files: YGR038C-B.t2k-w0.5.mod % Database Files: /projects/compbio/data/pdb/dunbrack-pdbaa % % Subsequence-submodel (local) (SW = 2) % Simple scores adjusted by ln(seq len) (adjust_score = 2) % Track 0 FIMs added (geometric mean of match probabilities (6)) % Single Track Model: YGR038C-B.t2k-w0.5.mod % Score DP Method: forward all-paths (dpstyle = 0) % Align DP Method: viterbi (adpstyle = 1) % 14684 sequences, 3366451 residues, 1756 nodes, 2344.26 seconds % % Sequence scores selected if better than: % E-value (Emax 4.0e+01) (select_score=4) % % Simple: NLL-NULL using FIM probabilities % Reverse: NLL-NULL for the reverse sequence NULL model % Calculated when Simple < simple_threshold (0.00) % E-value on N (=8162) sequences: % N / (1 + exp(-(lambda(=2.3334) * Reverse)^tau(=0.7457))) % Calculated when Simple < simple_threshold (0.00) % Rescale E-values or use -dbsize for multiple scoring runs. % Scores sorted by E-value, best first % % Sequence ID Length Simple Reverse E-value X count 1c0mA 238 -88.50 -64.19 5.18e-15 :238 XRAY 2.53 0.216 0.279 PROTEIN (INTEGRASE) || 1C0MB 1C0MC 1C0MD 1C1AA 1C1AB 1asu 162 -85.84 -63.70 6.57e-15 :162 XRAY 1.70 0.152 0.188 AVIAN SARCOMA VIRUS INTEGRASE || 1ASV0 1ASW0 1a5v 158 -84.44 -62.38 1.25e-14 :158 XRAY 1.90 0.152 0.210 INTEGRASE || 1A5W0 1A5X0 1cxqA 162 -84.38 -62.25 1.34e-14 :162 XRAY 1.02 0.129 0.157 AVIAN SARCOMA VIRUS INTEGRASE || 1CXUA 1CZBA 1vsd 152 -83.78 -61.89 1.59e-14 :152 XRAY 1.70 0.150 0.191 INTEGRASE || 1VSE0 1VSF0 1VSH0 1VSI0 1VSJ0 1vsmA 146 -82.74 -60.98 2.49e-14 :146 XRAY 2.15 0.146 0.238 PROTEIN (INTEGRASE) 1cz9A 162 -81.41 -59.30 5.73e-14 :162 XRAY 1.20 0.146 0.150 AVIAN SARCOMA VIRUS INTEGRASE 1vslA 146 -79.87 -58.13 1.02e-13 :146 XRAY 2.20 0.156 0.244 PROTEIN (INTEGRASE) || 1VSK0 1bisA 166 -67.86 -44.05 1.47e-10 :166 XRAY 1.95 0.204 0.256 HIV-1 INTEGRASE || 1BISB 1biuA 166 -67.39 -43.48 2.00e-10 :166 XRAY 2.50 0.198 0.265 HIV-1 INTEGRASE || 1BIUB 1BIUC 1qs4A 154 -67.14 -43.42 2.07e-10 :154 XRAY 2.10 0.209 0.255 PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49)) || 1QS4B 1QS4C 2itg 163 -65.89 -42.12 4.16e-10 :163 XRAY 2.60 0.200 NA HUMAN IMMUNODEFICIENCY VIRUS-1 INTEGRASE 1bl3A 160 -65.82 -42.10 4.21e-10 :160 XRAY 2.00 0.216 0.279 INTEGRASE || 1BI4A 1BI4C 1BL3B 1BL3C 1bhl 151 -65.62 -42.03 4.38e-10 :151 XRAY 2.20 0.224 0.264 HIV-1 INTEGRASE 1itg 166 -65.46 -41.63 5.44e-10 :166 XRAY 2.30 0.202 NA HIV-1 INTEGRASE 1b9dA 163 -65.40 -41.62 5.48e-10 :163 XRAY 1.70 0.224 0.278 PROTEIN (INTEGRASE) 1bizA 166 -65.41 -41.59 5.56e-10 :166 XRAY 1.95 0.212 0.253 HIV-1 INTEGRASE || 1BIZB 1bi4B 160 -64.97 -41.23 6.75e-10 :160 XRAY 2.50 0.232 0.271 INTEGRASE 1exqA 154 -65.14 -41.22 6.81e-10 :154 XRAY 1.60 0.253 0.271 POL POLYPROTEIN || 1EXQB 1k6yA 288 -71.37 -40.68 9.12e-10 :288 XRAY 2.40 0.233 0.260 pol polyprotein || 1K6YB 1K6YC 1K6YD 1c6vA 164 -62.98 -39.92 1.38e-09 :164 XRAY 3.00 0.203 0.362 PROTEIN (SIV INTEGRASE) || 1C6VB 1C6VC 1C6VD 1ex4A 239 -66.65 -39.68 1.58e-09 :239 XRAY 2.80 0.260 0.306 INTEGRASE || 1EX4B 1b9fA 163 -62.27 -38.69 2.73e-09 :163 XRAY 1.70 0.243 0.280 PROTEIN (INTEGRASE) 1b92A 163 -62.14 -38.45 3.12e-09 :163 XRAY 2.02 0.225 0.289 PROTEIN (INTEGRASE) 1hyvA 164 -58.38 -34.65 2.63e-08 :164 XRAY 1.70 0.221 0.263 INTEGRASE || 1HYZA 1a1tA 55 -40.14 -19.73 2.29e-04 :55 NMR NA NA NA NUCLEOCAPSID PROTEIN || 1F6UA 1MFS0 1aaf 55 -38.40 -18.12 6.71e-04 :55 NMR NA NA NA HIV-1 NUCLEOCAPSID PROTEIN 1bj6A 42 -36.09 -16.40 2.16e-03 :42 NMR NA NA NA NUCLEOCAPSID PROTEIN 7 || 1ESKA 1nc8 29 -33.25 -15.78 3.30e-03 :29 NMR NA NA NA NUCLEOCAPSID PROTEIN 1hvnE 18 -30.83 -14.99 5.74e-03 :18 NMR NA NA NA Hiv-1 Nucleocapsid Zinc Finger || 1HVOE 2ZNF0 1a6bB 40 -36.83 -14.64 7.39e-03 :40 NMR NA NA NA ZINC FINGER PROTEIN NCP10 1ncpN 17 -29.57 -13.94 1.21e-02 :17 NMR NA NA NA ? 1dsqA 21 -30.11 -13.36 1.85e-02 :21 NMR NA NA NA NUCLEIC ACID BINDING PROTEIN P14 1i50A 1733 -105.19 -12.31 3.98e-02 :1733 XRAY 2.80 0.229 0.282 DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT || 1I3QA 1I6HA 1K83A 1NIKA 1NT9A 1PQVA 1cl4A 60 -34.24 -12.24 4.18e-02 :60 NMR NA NA NA PROTEIN (GAG POLYPROTEIN) 1d4yA 99 -34.43 -12.24 4.21e-02 :99 XRAY 1.97 0.175 0.216 PROTEIN (HIV-1 PROTEASE) || 1A30A 1A30B 1A8KA 1A8KB 1A8KD 1A8KE 1D4YB 1HPOA 1HPOB 1MRWA 1MRWB 1MSMA 1MSMB 1hvc 203 -38.56 -12.05 4.83e-02 :203 XRAY 1.80 NA NA HIV-1 PROTEASE 1bdlA 99 -33.42 -11.47 7.48e-02 :99 XRAY 2.80 0.201 0.255 HIV-1 PROTEASE || 1BDLB 1kzkA 99 -33.88 -11.41 7.82e-02 :99 XRAY 1.09 0.152 0.189 Protease || 1KZKB 1YTGA 1YTGB 1YTHA 1YTHB 2AIDA 2AIDB 3AIDA 3AIDB 1g6lA 203 -38.24 -11.37 8.04e-02 :203 XRAY 1.90 0.195 0.284 HIV-1 PROTEASE 1aidA 99 -33.81 -11.36 8.13e-02 :99 XRAY 2.20 0.174 NA HUMAN IMMUNODEFICIENCY VIRUS PROTEASE || 1AIDB 1c6yA 99 -34.31 -11.35 8.19e-02 :99 XRAY 2.50 0.180 0.310 PROTEIN (PROTEASE) || 1C6XA 1C6XB 1C6YB 1C6ZA 1C6ZB 1mrxA 99 -33.50 -11.29 8.59e-02 :99 XRAY 2.00 0.208 0.250 POL polyprotein || 1MRXB 1MSNA 1MSNB 6fivA 113 -35.61 -11.20 9.13e-02 :113 XRAY 1.90 0.155 0.266 RETROPEPSIN 1bdrA 99 -33.07 -11.17 9.40e-02 :99 XRAY 2.80 0.201 0.255 HIV-1 PROTEASE || 1BDRB 1metA 99 -33.17 -11.11 9.81e-02 :99 XRAY 1.90 0.195 NA HIV-1 PROTEASE || 1BV7A 1BV7B 1METB 1bdqA 99 -33.09 -11.04 1.03e-01 :99 XRAY 2.50 0.191 0.261 HIV-1 PROTEASE || 1BDQB 1aaqA 99 -32.98 -10.91 1.15e-01 :99 XRAY 2.50 0.190 NA HIV-1 PROTEASE || 1AAQB 1proA 99 -32.89 -10.83 1.21e-01 :99 XRAY 1.80 0.185 0.310 HIV-1 PROTEASE || 1A8GA 1A8GB 1EBYA 1EBYB 1HXWA 1HXWB 1IZHA 1IZHB 1PROB 1SBGA 1SBGB 1VIJA 1VIJB 1VIKA 1VIKB 2HVP0 4PHVA 4PHVB 5HVPA 5HVPB 9HVPA 9HVPB 3tlhA 99 -32.83 -10.78 1.26e-01 :99 XRAY 2.00 0.195 0.281 PROTEIN (PROTEASE) 1hivA 99 -32.79 -10.78 1.26e-01 :99 XRAY 2.00 0.169 NA HIV-1 PROTEASE || 1HIVB 1HXBA 1HXBB 1ODWA 1ODWB 1difA 99 -32.77 -10.74 1.30e-01 :99 XRAY 1.70 0.198 NA HIV-1 PROTEASE || 1AJVA 1AJVB 1AJXA 1AJXB 1C70A 1C70B 1D4HA 1D4HB 1D4IA 1D4IB 1D4JA 1D4JB 1DIFB 1EBWA 1EBWB 1EBZA 1EBZB 1EC0A 1EC0B 1EC1A 1EC1B 1EC2A 1EC2B 1EC3A 1EC3B 1FQXA 1FQXB 1G2KA 1G2KB 1G35A 1G35B 1GNOA 1GNOB 1HBVA 1HBVB 1HHP0 1HIHA 1HIHB 1HOSA 1HOSB 1HPSA 1HPSB 1HPVA 1HPVB 1HPXA 1HPXB 1HSGA 1HSGB 1HTEA 1HTEB 1HTFA 1HTFB 1HTGA 1HTGB 1HVIA 1HVIB 1HVJA 1HVJB 1HVKA 1HVKB 1HVLA 1HVLB 1IIQA 1IIQB 1MUIA 1MUIB 1NPVA 1NPVB 1NPWA 1NPWB 1OHRA 1OHRB 1UPJ0 2BPVA 2BPVB 2BPWA 2BPWB 2BPXA 2BPXB 2BPYA 2BPYB 2BPZA 2BPZB 2UPJA 2UPJB 3PHV0 7UPJA 7UPJB 4fiv 113 -35.12 -10.71 1.33e-01 :113 XRAY 1.80 0.149 NA FELINE IMMUNODEFICIENCY VIRUS PROTEASE || 1B11A 1FIVA 1tcxA 99 -32.79 -10.66 1.38e-01 :99 XRAY 2.30 0.180 NA HIV PROTEASE || 1TCXB 1hvsA 99 -32.62 -10.63 1.41e-01 :99 XRAY 2.25 0.150 NA HIV-1 PROTEASE || 1HVSB 1odxA 99 -32.68 -10.62 1.42e-01 :99 XRAY 2.00 0.166 NA HIV-1 PROTEASE || 1ODXB 1odyA 99 -32.45 -10.56 1.49e-01 :99 XRAY 2.00 0.167 NA HIV-1 PROTEASE 1odyB 99 -32.18 -10.52 1.55e-01 :99 XRAY 2.00 0.167 NA HIV-1 PROTEASE 1ffiC 99 -32.25 -10.35 1.76e-01 :99 XRAY 1.70 0.211 0.252 PROTEASE RETROPEPSIN || 1FFFC 1FFFD 1FFID 1k2cA 99 -32.21 -10.19 1.99e-01 :99 XRAY 2.20 0.201 0.299 PROTEASE RETROPEPSIN || 1K2CB 5fivA 113 -34.58 -10.14 2.07e-01 :113 XRAY 1.90 0.164 0.240 RETROPEPSIN 1fg6C 99 -32.24 -10.11 2.12e-01 :99 XRAY 1.80 0.219 0.248 PROTEASE RETROPEPSIN || 1FG6D 1FG8C 1FG8D 1dazC 99 -32.61 -10.11 2.12e-01 :99 XRAY 1.55 0.213 0.256 HIV-1 PROTEASE (RETROPEPSIN) || 1DAZD 1FF0C 1FF0D 1hefE 99 -32.00 -10.03 2.26e-01 :99 XRAY 2.20 0.159 NA HIV-1 PROTEASE || 1HEGE 1k1tA 99 -32.58 -9.93 2.44e-01 :99 XRAY 1.20 0.196 0.227 PROTEASE RETROPEPSIN || 1K1TB 1a9mA 99 -31.89 -9.87 2.55e-01 :99 XRAY 2.30 0.185 NA HIV-1 PROTEASE || 1A9MB 1a94A 99 -31.99 -9.83 2.64e-01 :99 XRAY 2.00 0.182 0.281 HIV PROTEASE || 1A94B 1A94D 1A94E 1fgcC 99 -31.91 -9.83 2.64e-01 :99 XRAY 1.90 0.212 0.268 PROTEASE RETROPEPSIN || 1FGCD 1bwbA 99 -31.87 -9.82 2.66e-01 :99 XRAY 1.80 0.199 NA PROTEIN (HIV-1 PROTEASE) || 1BWAA 1BWAB 1BWBB 1MEUA 1MEUB 1d4sA 99 -31.84 -9.78 2.74e-01 :99 XRAY 2.50 0.179 0.294 PROTEIN (HIV-1 PROTEASE) || 1D4SB 1lv1A 203 -36.59 -9.70 2.91e-01 :203 XRAY 2.10 0.194 0.260 HIV-1 protease 1ebkC 99 -31.77 -9.68 2.96e-01 :99 XRAY 2.06 0.192 0.306 HIV-1 PROTEASE || 1EBKD 1EBKE 1EBKF 1gnnA 99 -31.86 -9.54 3.32e-01 :99 XRAY 2.30 0.183 NA HIV-1 PROTEASE || 1GNNB 1iziA 99 -31.69 -9.53 3.33e-01 :99 XRAY 2.15 0.192 0.248 proteinase || 1IZIB 1merA 99 -31.49 -9.48 3.46e-01 :99 XRAY 1.90 0.187 NA HIV-1 PROTEASE || 1BV9A 1BV9B 1MERB 1MESA 1MESB 1k6vA 99 -32.38 -9.48 3.47e-01 :99 XRAY 2.00 0.177 0.211 POL polyprotein || 1K6CA 1K6CB 1K6PA 1K6PB 1K6TA 1K6TB 1K6VB 1idaA 99 -31.37 -9.47 3.50e-01 :99 XRAY 1.70 0.196 NA HIV-2 PROTEASE || 1HIIA 1HIIB 1HSHA 1HSHB 1HSHC 1HSHD 1HSIA 1HSIB 1IDAB 1IDBA 1IDBB 1JLDA 1JLDB 2MIPA 2MIPB 2MIPC 2MIPD 1ncpC 18 -26.12 -9.44 3.59e-01 :18 NMR NA NA NA ? 1lzqA 99 -31.56 -9.43 3.60e-01 :99 XRAY 2.20 0.208 0.252 PROTEASE RETROPEPSIN || 1LZQB 1gnmA 99 -31.56 -9.30 4.00e-01 :99 XRAY 2.30 0.175 NA HIV-1 PROTEASE || 1GNMB 1k1uA 99 -31.72 -9.23 4.24e-01 :99 XRAY 1.55 0.196 0.265 PROTEASE RETROPEPSIN || 1K1UB 1k2bA 99 -31.34 -9.21 4.29e-01 :99 XRAY 1.70 0.215 0.278 PROTEASE RETROPEPSIN || 1K2BB 1fb7A 99 -31.17 -9.14 4.54e-01 :99 XRAY 2.60 0.187 0.243 HIV-1 PROTEASE 1tcwA 99 -31.10 -8.97 5.21e-01 :99 XRAY 2.40 0.197 NA SIV PROTEASE || 1SIVA 1SIVB 1TCWB 1fejC 99 -31.03 -8.95 5.31e-01 :99 XRAY 1.78 0.215 0.285 PROTEASE RETROPEPSIN || 1DW6C 1DW6D 1FEJD 1hvhA 99 -30.95 -8.91 5.48e-01 :99 XRAY 1.80 0.188 NA HIV-1 PROTEASE || 1BVEA 1BVEB 1BVGA 1BVGB 1DMPA 1DMPB 1HVHB 1HVRA 1HVRB 1HWRA 1HWRB 1QBRA 1QBRB 1QBSA 1QBSB 1QBTA 1QBTB 1QBUA 1QBUB 1sip 99 -31.05 -8.85 5.73e-01 :99 XRAY 2.30 0.170 NA UNLIGANDED SIV PROTEASE 1axaA 99 -30.96 -8.84 5.77e-01 :99 XRAY 2.00 0.194 NA HIV-1 PROTEASE || 1AXAB 2sam 99 -31.17 -8.80 5.99e-01 :99 XRAY 2.40 0.190 NA SIV PROTEASE 4upjA 99 -30.68 -8.71 6.41e-01 :99 XRAY 1.90 0.206 NA HIV-2 PROTEASE || 1IVPA 1IVPB 1IVQA 1IVQB 2HPEA 2HPEB 2HPFA 2HPFB 3UPJA 3UPJB 4UPJB 5UPJA 5UPJB 6UPJA 6UPJB 1n4lA 255 -39.13 -8.64 6.78e-01 :255 XRAY 2.00 0.241 0.269 Reverse Transcriptase || 1D1UA 1i6jA 256 -39.17 -8.63 6.87e-01 :256 XRAY 2.00 0.225 0.252 REVERSE TRANSCRIPTASE 1az5 99 -30.89 -8.59 7.10e-01 :99 XRAY 2.00 0.204 0.266 SIV PROTEASE || 1YTIA 1YTJA 1qajA 259 -39.25 -8.58 7.16e-01 :259 XRAY 2.30 0.200 0.259 REVERSE TRANSCRIPTASE || 1D0EA 1D0EB 1QAJB 1kjgA 99 -30.77 -8.41 8.18e-01 :99 XRAY 2.00 0.184 0.226 POL POLYPROTEIN || 1F7AA 1F7AB 1KJ4A 1KJ4B 1KJ4C 1KJ4D 1KJ7A 1KJ7B 1KJFA 1KJFB 1KJGB 1KJHA 1KJHB 1mt7A 99 -30.61 -8.38 8.41e-01 :99 XRAY 1.90 0.201 0.227 PROTEASE RETROPEPSIN || 1MT7B 1MT8A 1MT8B 1MT9A 1MT9B 1N49A 1N49B 1N49C 1N49D 1mtbA 99 -30.70 -8.37 8.48e-01 :99 XRAY 2.50 0.191 0.257 PROTEASE RETROPEPSIN || 1MTBB 1baiA 124 -31.85 -8.10 1.05e+00 :124 XRAY 2.40 0.175 0.293 ROUS SARCOMA VIRUS PROTEASE || 1BAIB 1mml 265 -39.36 -8.10 1.06e+00 :265 XRAY 1.80 0.198 0.257 MMLV REVERSE TRANSCRIPTASE || 1QAIA 1QAIB 1mtrA 97 -30.22 -7.94 1.21e+00 :97 XRAY 1.75 0.179 0.244 HIV-1 PROTEASE || 1B6KA 1B6KB 1B6LA 1B6LB 1B6MA 1B6MB 1B6NA 1B6NB 1B6OA 1B6OB 1B6PA 1B6PB 1D4KA 1D4KB 1D4LA 1D4LB 1MTRB 3fivA 116 -32.26 -7.63 1.57e+00 :116 XRAY 1.85 0.172 NA FELINE IMMUNODEFICIENCY VIRUS PROTEASE || 2FIVA 2FIVB 3FIVB 2rspA 124 -30.99 -7.46 1.80e+00 :124 XRAY 2.00 0.144 NA RSV PROTEASE || 2RSPB 1cmvA 256 -33.85 -7.29 2.07e+00 :256 XRAY 2.27 0.241 0.310 HUMAN CYTOMEGALOVIRUS PROTEASE || 1CMVB 1mvpA 124 -30.85 -7.29 2.08e+00 :124 XRAY 2.20 0.172 NA MYELOBLASTOSIS ASSOCIATED VIRAL PROTEASE || 1MVPB 1ao0A 459 -40.70 -7.11 2.42e+00 :459 XRAY 2.80 0.214 0.264 GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE AMIDOTRANSFERASE || 1AO0B 1AO0C 1AO0D 1gph1 465 -41.06 -7.10 2.45e+00 :465 XRAY 3.00 0.182 NA GLUTAMINE PHOSPHORIBOSYL-PYROPHOSPHATE AMIDOTRANSFERASE || 1GPH2 1GPH3 1GPH4 1dsvA 31 -25.92 -6.92 2.85e+00 :31 NMR NA NA NA NUCLEIC ACID BINDING PROTEIN P14 1k3yA 221 -33.60 -6.89 2.92e+00 :221 XRAY 1.30 0.137 0.205 GLUTATHIONE S-TRANSFERASE A1 || 1GSDA 1GSDB 1GSDC 1GSDD 1GSFA 1GSFB 1GSFC 1GSFD 1GUHA 1GUHB 1GUHC 1GUHD 1K3LA 1K3LB 1K3OA 1K3OB 1K3YB 1gseA 221 -33.61 -6.88 2.94e+00 :221 XRAY 2.00 0.197 0.243 GLUTATHIONE TRANSFERASE || 1GSEB 1jj22 92 -28.60 -6.84 3.06e+00 :92 XRAY 2.40 0.189 0.222 RIBOSOMAL PROTEIN L44E || 1FFKZ 1K734 1K8A4 1K9M4 1KC84 1KD14 1KQS2 1M1K4 1M904 1N8R4 1NJI4 1Q7Y4 1Q814 1Q824 1Q864 1b6jA 97 -28.80 -6.64 3.62e+00 :97 XRAY 1.85 0.175 0.219 RETROPEPSIN || 1B6JB 1CPIA 1CPIB 3HVP0 4HVPA 4HVPB 7HVPA 7HVPB 8HVPA 8HVPB 2tbvA 387 -34.45 -6.54 3.95e+00 :387 XRAY 2.90 0.200 NA TOMATO BUSHY STUNT VIRUS || 2TBVB 2TBVC 1dmuA 299 -36.69 -6.29 4.95e+00 :299 XRAY 2.20 0.185 0.239 BGLI RESTRICTION ENDONUCLEASE 1qs8A 329 -37.06 -6.23 5.17e+00 :329 XRAY 2.50 0.197 0.250 PLASMEPSIN || 1QS8B 1miqA 375 -39.36 -6.23 5.21e+00 :375 XRAY 2.50 0.205 0.245 plasmepsin || 1MIQB 1akw 147 -29.87 -6.09 5.89e+00 :147 XRAY 1.75 0.182 0.194 FLAVODOXIN 1itwA 741 -55.15 -5.95 6.64e+00 :741 XRAY 1.95 0.193 0.228 Isocitrate dehydrogenase || 1ITWB 1ITWC 1ITWD 1J1WA 1J1WB 1J1WC 1J1WD 1i1oA 147 -29.97 -5.92 6.82e+00 :147 XRAY 2.00 0.220 NA FLAVODOXIN 1o0lA 188 -29.95 -5.88 7.09e+00 :188 NMR NA NA NA Apoptosis regulator Bcl-W 1o86A 589 -39.27 -5.87 7.17e+00 :589 XRAY 2.00 0.180 0.220 ANGIOTENSIN CONVERTING ENZYME || 1O8AA 1azl 147 -29.67 -5.83 7.40e+00 :147 XRAY 1.80 0.175 NA FLAVODOXIN 1fx1 148 -29.75 -5.79 7.68e+00 :148 XRAY 2.00 NA NA FLAVODOXIN 1wioA 363 -33.28 -5.73 8.11e+00 :363 XRAY 3.90 0.240 0.351 T-CELL SURFACE GLYCOPROTEIN CD4 || 1WIOB 1WIPA 1WIPB 1WIQA 1WIQB 1aocA 175 -28.26 -5.53 9.73e+00 :175 XRAY 2.00 0.191 0.282 COAGULOGEN || 1AOCB 1g0vA 329 -38.33 -5.46 1.04e+01 :329 XRAY 2.00 0.198 0.231 PROTEINASE A 2jxrA 329 -38.47 -5.45 1.04e+01 :329 XRAY 2.40 0.193 0.270 PROTEINASE A || 1FQ4A 1FQ5A 1FQ6A 1FQ7A 1FQ8A 1dpjA 329 -38.43 -5.42 1.07e+01 :329 XRAY 1.80 0.192 0.213 PROTEINASE A || 1DP5A 1FMUA 1FMXA 1FMXB 1akr 147 -29.15 -5.41 1.08e+01 :147 XRAY 1.58 0.184 NA FLAVODOXIN 1jq6A 256 -31.59 -5.39 1.11e+01 :256 XRAY 2.30 0.236 0.286 ASSEMBLIN || 1JQ7A 1JQ7B 1i6vA 314 -33.73 -5.38 1.11e+01 :314 XRAY 3.30 0.280 0.359 DNA-DIRECTED RNA POLYMERASE || 1I6VB 1akt 147 -29.25 -5.34 1.15e+01 :147 XRAY 1.80 0.183 NA FLAVODOXIN 1c7fA 147 -29.32 -5.33 1.17e+01 :147 XRAY 2.00 0.190 0.240 FLAVODOXIN || 1C7EA 1C7EB 1C7FB 1kufA 203 -28.71 -5.27 1.22e+01 :203 XRAY 1.35 0.252 0.204 metalloproteinase || 1KUIA 1KUKA 1zin 217 -31.18 -5.21 1.30e+01 :217 XRAY 1.60 0.173 0.216 ADENYLATE KINASE || 1ZIO0 1ZIP0 1qkkA 155 -29.94 -5.17 1.35e+01 :155 XRAY 1.70 0.218 0.241 C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN 1jt6A 188 -29.03 -5.15 1.38e+01 :188 XRAY 2.54 0.209 0.256 Hypothetical transcriptional regulator IN QACA 5region || 1JT6B 1JT6D 1JT6E 1lay 256 -31.78 -5.11 1.43e+01 :256 XRAY 2.50 0.185 NA CYTOMEGALOVIRUS PROTEASE 1mk3A 178 -28.56 -5.11 1.43e+01 :178 NMR NA NA NA Apoptosis regulator Bcl-W 1agsA 221 -31.68 -5.10 1.43e+01 :221 XRAY 2.50 0.310 NA GLUTATHIONE S-TRANSFERASE ALPHA || 1AGSB 1wpoA 256 -31.64 -5.10 1.44e+01 :256 XRAY 2.00 0.221 0.288 HUMAN CYTOMEGALOVIRUS PROTEASE || 1WPOB 1jusA 194 -29.07 -5.10 1.44e+01 :194 XRAY 2.84 0.230 0.272 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5REGION || 1JT0A 1JT0B 1JT0C 1JT0D 1JTXA 1JTXB 1JTXD 1JTXE 1JTYA 1JTYB 1JTYD 1JTYE 1JUMA 1JUMB 1JUMD 1JUME 1JUPA 1JUPB 1JUPD 1JUPE 1JUSB 1JUSD 1JUSE 1j9gA 147 -28.99 -5.09 1.45e+01 :147 XRAY 2.40 0.204 0.247 Flavodoxin 1l5zA 155 -29.85 -5.09 1.45e+01 :155 XRAY 2.00 0.196 0.232 C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD || 1L5YA 1L5YB 1m6eX 359 -35.30 -5.05 1.50e+01 :359 XRAY 3.00 0.225 0.288 S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase 1j8qA 147 -29.10 -5.05 1.50e+01 :147 XRAY 1.35 0.162 0.181 FLAVODOXIN || 2FX20 3FX20 4FX20 5FX20 1bu5A 147 -29.09 -5.04 1.51e+01 :147 XRAY 1.83 0.169 0.202 PROTEIN (FLAVODOXIN) || 1BU5B 2bbvA 363 -33.89 -5.04 1.53e+01 :363 XRAY 2.80 0.221 NA PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) || 2BBVB 2BBVC 1njtA 256 -31.56 -4.98 1.60e+01 :256 XRAY 2.50 0.228 0.271 Capsid protein P40 || 1NJTB 1NJTC 1NJTD 1NJUA 1NJUB 1NJUC 1NJUD 1NKMA 1NKMB 1f4pA 147 -29.13 -4.96 1.64e+01 :147 XRAY 1.30 0.126 0.169 FLAVODOXIN 2wpoA 256 -31.51 -4.92 1.70e+01 :256 XRAY 2.70 0.226 0.332 HUMAN CYTOMEGALOVIRUS PROTEASE || 2WPOB 2WPOC 2WPOD 1akq 147 -28.70 -4.89 1.75e+01 :147 XRAY 1.90 0.196 0.240 FLAVODOXIN || 1AKU0 1AKV0 1nkkA 256 -31.46 -4.88 1.76e+01 :256 XRAY 2.60 0.233 0.280 Capsid protein P40 || 1NKKB 1NKKC 1NKKD 1kugA 203 -28.15 -4.84 1.83e+01 :203 XRAY 1.37 0.172 0.202 metalloproteinase 1iefA 256 -31.33 -4.82 1.86e+01 :256 XRAY 2.30 0.229 0.270 CAPSID PROTEIN P40: ASSEMBLIN PROTEASE || 1IEFB 1iegA 256 -31.31 -4.82 1.87e+01 :256 XRAY 2.00 0.226 0.259 CAPSID PROTEIN P40: ASSEMBLIN PROTEASE || 1IEGB 1m2oA 768 -44.44 -4.81 1.88e+01 :768 XRAY 2.50 0.238 0.294 protein transport protein SEC23 || 1M2OC 1M2VA 1nw1A 429 -36.66 -4.78 1.93e+01 :429 XRAY 2.02 0.209 0.231 Choline kinase (49.2 kD) || 1NW1B 3gtuB 224 -32.43 -4.75 1.99e+01 :224 XRAY 2.80 0.225 0.270 GLUTATHIONE S-TRANSFERASE || 3GTUD 1gteA 1025 -72.96 -4.75 2.00e+01 :1025 XRAY 1.65 0.181 0.197 DIHYDROPYRIMIDINE DEHYDROGENASE || 1GT8A 1GT8B 1GT8C 1GT8D 1GTEB 1GTEC 1GTED 1GTHA 1GTHB 1GTHC 1GTHD 1H7WA 1H7WB 1H7WC 1H7WD 1h7xA 1025 -72.77 -4.75 2.00e+01 :1025 XRAY 2.01 0.171 0.192 DIHYDROPYRIMIDINE DEHYDROGENASE || 1H7XB 1H7XC 1H7XD 1id4A 256 -31.29 -4.73 2.02e+01 :256 XRAY 2.20 0.221 0.262 CAPSID PROTEIN P40: ASSEMBLIN PROTEASE || 1ID4B 1ls5A 328 -36.37 -4.69 2.11e+01 :328 XRAY 2.80 0.220 0.290 plasmepsin IV || 1LS5B 1o6gA 710 -54.12 -4.53 2.46e+01 :710 XRAY 1.40 0.200 0.216 PROLYL ENDOPEPTIDASE 1ddxA 552 -40.90 -4.52 2.48e+01 :552 XRAY 3.00 0.267 0.324 PROTEIN (PROSTAGLANDIN H2 SYNTHASE-2) || 1DDXB 1DDXC 1DDXD 1j0hA 588 -47.65 -4.51 2.50e+01 :588 XRAY 1.90 0.163 0.203 neopullulanase || 1J0HB 1J0IA 1J0IB 1j0jA 588 -47.49 -4.51 2.50e+01 :588 XRAY 2.80 0.176 0.251 neopullulanase || 1J0JB 1J0KA 1J0KB 1e5tA 710 -54.01 -4.51 2.51e+01 :710 XRAY 1.70 0.184 0.206 PROLYL ENDOPEPTIDASE 1iedA 256 -31.11 -4.50 2.54e+01 :256 XRAY 2.00 0.226 0.269 CAPSID PROTEIN P40: ASSEMBLIN PROTEASE || 1IEDB 1cvuA 552 -41.20 -4.50 2.54e+01 :552 XRAY 2.40 0.204 0.235 PROSTAGLANDIN H2 SYNTHASE-2 || 1CVUB 1g91A 77 -24.65 -4.49 2.56e+01 :77 NMR NA NA NA MYELOID PROGENITOR INHIBITORY FACTOR-1 1e8nA 710 -54.28 -4.48 2.58e+01 :710 XRAY 1.50 0.192 0.212 PROLYL ENDOPEPTIDASE || 1E8MA 1H2ZA 1UOOA 1UOPA 1UOQA 1ps9A 671 -53.03 -4.48 2.58e+01 :671 XRAY 2.20 0.205 0.243 2,4-dienoyl-CoA reductase 1c8dA 584 -41.92 -4.44 2.66e+01 :584 XRAY 3.00 0.214 NA CANINE PARVOVIRUS CAPSID || 1IJSP 1o6fA 710 -53.90 -4.44 2.67e+01 :710 XRAY 1.60 0.202 0.221 PROLYL ENDOPEPTIDASE 1l4dB 122 -27.15 -4.43 2.69e+01 :122 XRAY 2.30 0.206 0.263 STREPTOKINASE 1h2xA 710 -54.22 -4.39 2.80e+01 :710 XRAY 1.49 0.175 0.196 PROLYL ENDOPEPTIDASE || 1H2YA 1h2wA 710 -54.09 -4.39 2.81e+01 :710 XRAY 1.39 0.212 0.230 PROLYL ENDOPEPTIDASE || 1QFMA 1QFSA 1dceA 567 -34.59 -4.38 2.83e+01 :567 XRAY 2.00 0.215 0.263 PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT) || 1DCEC 1LTXA 2hpqP 79 -24.80 -4.33 2.97e+01 :79 XRAY 3.30 0.155 NA ALPHA-THROMBIN 1g8oA 310 -32.55 -4.30 3.06e+01 :310 XRAY 2.30 0.209 0.335 N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE || 1FG5N 1G93A 1ig3A 263 -30.68 -4.26 3.17e+01 :263 XRAY 1.90 0.214 0.239 thiamin pyrophosphokinase || 1IG3B 1fxiA 96 -26.31 -4.23 3.28e+01 :96 XRAY 2.20 0.230 NA FERREDOXIN I || 1FXIB 1FXIC 1FXID 1ipkA 416 -36.89 -4.23 3.29e+01 :416 XRAY 2.70 0.205 0.275 BETA-CONGLYCININ, BETA CHAIN || 1IPKB 1IPKC 1d0bA 213 -28.57 -4.20 3.38e+01 :213 XRAY 1.86 0.210 0.235 INTERNALIN B 1ln1A 214 -29.78 -4.19 3.41e+01 :214 XRAY 2.40 0.237 0.296 Phosphatidylcholine transfer protein || 1LN2A 1LN2B 1LN3A 1LN3B 1fpv 584 -41.91 -4.15 3.54e+01 :584 XRAY 3.30 NA NA FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL PROTEIN 2 1mea 28 -21.53 -4.13 3.60e+01 :28 NMR NA NA NA METHIONYL-tRNA SYNTHETASE || 1MED0 1j9eA 147 -28.09 -4.03 3.98e+01 :147 XRAY 1.44 0.139 0.156 FLAVODOXIN 4dpvZ 584 -41.11 -4.03 3.98e+01 :584 XRAY 2.90 NA 0.283 PROTEIN (PARVOVIRUS COAT PROTEIN) || 1C8HA