# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1asu 162 3.69e-13 1cxqA c.55.3.2 33626 1vsd 152 3.94e-13 1cxqA c.55.3.2 33625 1cxqA 162 1.01e-12 1cxqA c.55.3.2 33621 2itg 163 1.94e-08 1b9dA c.55.3.2 33669 1hyvA 166 2.50e-07 1b9dA c.55.3.2 61424 1b9dA 163 2.71e-07 1b9dA c.55.3.2 33649 1exqA 154 7.20e-07 1b9dA c.55.3.2 33646 1bl3A 160 7.37e-07 1b9dA c.55.3.2 33655 1itg 166 1.00e-05 1b9dA c.55.3.2 33661 1hvc 203 3.06e-02 1hvc b.50.1.1 26614 1mfs 55 4.63e-02 1mfs g.40.1.1 45167 1a1tA 55 7.04e-02 1a1tA g.40.1.1 45165 1f6uA 55 8.21e-02 1a1tA g.40.1.1 45164 1dlc 584 9.27e-02 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1difA 99 9.43e-02 1fmb b.50.1.1 26503 1kzkA 99 1.49e-01 b.50.1.1 73371 1aaf 55 1.51e-01 1aaf g.40.1.1 45166 1fivA 113 2.14e-01 1fmb b.50.1.1 26764 4fiv 113 2.14e-01 1fmb b.50.1.1 26762 1nc8 29 2.34e-01 g.40.1.1 45170 1dazC 99 2.78e-01 1hvc b.50.1.1 26501 5hvpA 99 4.01e-01 1fmb b.50.1.1 26605 1aoqA 567 4.49e-01 1qksA a.3.1.2 15934 b.70.2.1 27692 1k1tA 99 5.62e-01 b.50.1.1 71995 1dsqA 21 6.03e-01 g.40.1.1 45173 1qksA 567 6.24e-01 1qksA a.3.1.2 15951 b.70.2.1 27710 2fivA 116 8.43e-01 1fmb b.50.1.1 26766 3fivA 116 8.53e-01 1fmb b.50.1.1 26768 1idaA 99 9.12e-01 1fmb b.50.1.1 26715 1a7cA 379 1.54e+00 1sek e.1.1.1 42660 1djxB 624 1.98e+00 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1lj5A 379 2.39e+00 e.1.1.1 73928 1a6bB 40 2.41e+00 1a6bB g.40.1.1 45172 1qasA 622 2.51e+00 1djxB a.39.1.7 17340 b.7.1.1 23157 c.1.18.1 29585 1bveA 99 2.61e+00 1hvc b.50.1.1 26713 1qmyA 167 2.82e+00 1qmyA d.3.1.2 37094 1mml 265 3.01e+00 1mml e.8.1.2 43015 1djxA 624 3.08e+00 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1fmb 104 3.62e+00 1fmb b.50.1.1 26777 1dvpA 220 3.72e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1e2uA 553 3.85e+00 1e1dA e.26.1.1 43362 1e1dA 553 3.97e+00 1e1dA e.26.1.1 43363 1ayx 492 4.02e+00 1ayx a.102.1.1 18825 1gntA 553 4.02e+00 e.26.1.1 70290 1dc1A 323 4.12e+00 1dc1A c.52.1.11 33321 1ciy 590 4.32e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1floA 422 4.95e+00 1floA a.60.9.1 18106 d.163.1.1 42166 1f2eA 201 5.39e+00 1a0fA a.45.1.1 17745 c.47.1.5 33039 1cb8A 678 5.76e+00 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1qatB 622 5.84e+00 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1qmtA 134 7.88e+00 7rsa d.5.1.1 37290 1gnlA 544 8.23e+00 e.26.1.1 70287 1ffkZ 92 8.40e+00 1ffkZ g.41.8.3 45317 1jmoA 480 8.57e+00 e.1.1.1 77138 1bg1A 722 8.79e+00 1bg1A a.47.1.1 17767 b.2.5.5 22461 d.93.1.1 40527 1miqA 375 8.79e+00 b.50.1.2 79151 1jj22 92 8.80e+00 1ffkZ 1h1hA 134 9.00e+00 d.5.1.1 76468 1eybA 471 9.06e+00 1ey2A b.82.1.4 28115 3psg 370 9.75e+00 1smrA b.50.1.2 26841 1kwkA 645 1.03e+01 b.71.1.1 77565 c.1.8.1 77566 c.23.16.5 77567 1gpl 432 1.04e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1kwgA 645 1.15e+01 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 2cb5A 453 1.17e+01 3gcb d.3.1.1 37035 1i5pA 633 1.19e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1eguA 731 1.20e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1vnc 609 1.23e+01 1vns a.111.1.3 19065 1lxkA 721 1.25e+01 a.102.3.2 74331 b.24.1.1 74332 b.30.5.2 74333 1m1cA 680 1.26e+01 e.42.1.1 78395 1aocA 175 1.27e+01 1aocA g.17.1.5 44817 1cqxA 403 1.36e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1ojqA 212 1.39e+01 1n7oA 721 1.40e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1nqcA 217 1.41e+01 1j7xA 302 1.52e+01 c.14.1.2 66425 1iznA 286 1.63e+01 1zin 217 1.67e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1mkeA 152 1.68e+01 b.55.1.4 79231 1dytA 133 1.74e+01 7rsa d.5.1.1 37288 1hm2A 700 1.78e+01 1cb8A a.102.3.2 61083 b.24.1.1 61084 b.30.5.2 61085 1mhyD 521 1.79e+01 1mhyD a.25.1.2 16780 1vns 609 1.80e+01 1vns a.111.1.3 19061 1cl4A 60 1.82e+01 1cl4A g.40.1.1 45171 1o86A 589 1.95e+01 d.92.1.5 81177 1ksfX 758 2.02e+01 a.174.1.1 77522 c.37.1.20 77523 c.37.1.20 77524 1jmxA 494 2.08e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1dupA 152 2.13e+01 1dupA b.85.4.1 28351 1dsvA 31 2.21e+01 1dsvA g.40.1.1 45174 1mo9A 523 2.26e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1ki1B 352 2.30e+01 a.87.1.1 72497 b.55.1.1 72498 1js8A 394 2.31e+01 a.86.1.1 67219 b.112.1.1 67220 1euwA 152 2.31e+01 1dupA b.85.4.1 28349 1giqA 413 2.31e+01 d.166.1.1 76224 d.166.1.1 76225 1uor 585 2.46e+01 1bj5 a.126.1.1 19396 a.126.1.1 19397 a.126.1.1 19398 1aomA 567 2.50e+01 1qksA b.70.2.1 27694 1jnyA 435 2.67e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1fpxA 352 2.87e+01 1fpxA a.4.5.29 59950 c.66.1.12 59951 1pbyA 489 2.87e+01 1o20A 427 2.92e+01 1d3cA 686 2.94e+01 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 2occB 227 3.02e+01 2occB b.6.1.2 23027 f.17.2.1 43519 1ad3A 452 3.07e+01 1ad3A c.82.1.1 35335 1ey2A 471 3.08e+01 1ey2A b.82.1.4 28116 1gcyA 527 3.09e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1smpI 101 3.11e+01 1smpI b.61.2.1 27417 1hx0A 496 3.13e+01 b.71.1.1 61346 c.1.8.1 61347 1jjuA 489 3.15e+01 a.3.1.7 66774 a.3.1.7 66775 b.1.18.14 66776 b.1.18.14 66777 b.61.4.1 66778 1fha 183 3.32e+01 2fha a.25.1.1 16675 2fha 183 3.32e+01 2fha a.25.1.1 16674 1pamA 686 3.32e+01 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1ds6B 180 3.34e+01 1rhoA b.1.18.8 21898 1ot1A 686 3.34e+01 1keoA 154 3.37e+01 b.64.1.1 68534 1cxlA 686 3.39e+01 1cxlA b.1.18.2 21829 b.3.1.1 22498 b.71.1.1 27736 c.1.8.1 28723 1eyyA 510 3.40e+01 1eyyA c.82.1.1 35389 1ku2A 241 3.44e+01 a.112.1.1 72998 1ez0A 510 3.73e+01 1eyyA c.82.1.1 35385 2rspB 124 3.78e+01 2rspB b.50.1.1 26772 1m0wA 491 3.79e+01 c.30.1.4 78363 d.142.1.6 78364 1fp2A 352 3.82e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1ig3A 263 3.94e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1g87A 614 3.98e+01 1ha1 184 3.98e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1fkmA 396 3.98e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316