# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1asu 162 8.91e-13 1cxqA c.55.3.2 33626 1vsd 152 1.26e-12 1cxqA c.55.3.2 33625 1cxqA 162 2.65e-12 1cxqA c.55.3.2 33621 2itg 163 1.77e-08 1b9dA c.55.3.2 33669 1hyvA 166 3.30e-07 1b9dA c.55.3.2 61424 1b9dA 163 3.39e-07 1b9dA c.55.3.2 33649 1exqA 154 5.99e-07 1b9dA c.55.3.2 33646 1bl3A 160 1.12e-06 1b9dA c.55.3.2 33655 1itg 166 7.00e-06 1b9dA c.55.3.2 33661 1hvc 203 1.17e-02 1hvc b.50.1.1 26614 1mfs 55 3.86e-02 1mfs g.40.1.1 45167 1difA 99 4.23e-02 1fmb b.50.1.1 26503 1kzkA 99 4.70e-02 b.50.1.1 73371 5hvpA 99 4.74e-02 1fmb b.50.1.1 26605 1aaf 55 9.28e-02 1aaf g.40.1.1 45166 1k1tA 99 1.12e-01 b.50.1.1 71995 1a1tA 55 1.19e-01 1a1tA g.40.1.1 45165 1dazC 99 1.23e-01 1hvc b.50.1.1 26501 1f6uA 55 1.31e-01 1a1tA g.40.1.1 45164 1bveA 99 1.38e-01 1hvc b.50.1.1 26713 1dlc 584 1.42e-01 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 4fiv 113 1.45e-01 1fmb b.50.1.1 26762 1fivA 113 1.94e-01 1fmb b.50.1.1 26764 1idaA 99 2.80e-01 1fmb b.50.1.1 26715 1nc8 29 3.14e-01 g.40.1.1 45170 2fivA 116 3.82e-01 1fmb b.50.1.1 26766 3fivA 116 6.10e-01 1fmb b.50.1.1 26768 1dsqA 21 1.07e+00 g.40.1.1 45173 1a6bB 40 1.17e+00 1a6bB g.40.1.1 45172 1lxkA 721 1.27e+00 a.102.3.2 74331 b.24.1.1 74332 b.30.5.2 74333 1qksA 567 1.28e+00 1qksA a.3.1.2 15951 b.70.2.1 27710 1mml 265 1.45e+00 1mml e.8.1.2 43015 1aoqA 567 1.46e+00 1qksA a.3.1.2 15934 b.70.2.1 27692 1n7oA 721 1.47e+00 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1vns 609 1.56e+00 1vns a.111.1.3 19061 1fmb 104 1.56e+00 1fmb b.50.1.1 26777 1eguA 731 1.65e+00 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1floA 422 2.31e+00 1floA a.60.9.1 18106 d.163.1.1 42166 1vnc 609 3.28e+00 1vns a.111.1.3 19065 1a7cA 379 3.44e+00 1sek e.1.1.1 42660 1jmoA 480 3.91e+00 e.1.1.1 77138 1lj5A 379 3.93e+00 e.1.1.1 73928 1ciy 590 4.07e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1djxB 624 4.43e+00 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1qmyA 167 5.14e+00 1qmyA d.3.1.2 37094 1dvpA 220 6.49e+00 1dvpA a.118.9.2 19216 g.50.1.1 45358 1kwkA 645 7.73e+00 b.71.1.1 77565 c.1.8.1 77566 c.23.16.5 77567 1gnlA 544 8.15e+00 e.26.1.1 70287 1kwgA 645 8.20e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 3psg 370 8.83e+00 1smrA b.50.1.2 26841 1h0oA 390 1.00e+01 a.25.1.2 70845 1o86A 589 1.07e+01 d.92.1.5 81177 1xsm 390 1.10e+01 1xsm a.25.1.2 16804 2rspB 124 1.12e+01 2rspB b.50.1.1 26772 1hm2A 700 1.16e+01 1cb8A a.102.3.2 61083 b.24.1.1 61084 b.30.5.2 61085 1jj22 92 1.43e+01 1ffkZ 1h1hA 134 1.43e+01 d.5.1.1 76468 1qmtA 134 1.43e+01 7rsa d.5.1.1 37290 2rspA 124 1.55e+01 2rspB b.50.1.1 26771 1i1iP 681 1.57e+01 1i1iP d.92.1.5 40297 1ehkA 562 1.58e+01 1ehkA f.24.1.1 43624 1ffkZ 92 1.60e+01 1ffkZ g.41.8.3 45317 1mhyD 521 1.70e+01 1mhyD a.25.1.2 16780 1e2uA 553 1.70e+01 1e1dA e.26.1.1 43362 1gntA 553 1.70e+01 e.26.1.1 70290 1e1dA 553 1.73e+01 1e1dA e.26.1.1 43363 1mkeA 152 1.74e+01 b.55.1.4 79231 1cb8A 678 1.79e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1dytA 133 1.88e+01 7rsa d.5.1.1 37288 1ds6B 180 1.96e+01 1rhoA b.1.18.8 21898 1gpl 432 2.12e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1aocA 175 2.13e+01 1aocA g.17.1.5 44817 1kanA 253 2.16e+01 1knyA a.24.16.1 75878 d.218.1.1 75879 1cg2A 393 2.22e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1qasA 622 2.23e+01 1djxB a.39.1.7 17340 b.7.1.1 23157 c.1.18.1 29585 1jmxA 494 2.24e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1dc1A 323 2.35e+01 1dc1A c.52.1.11 33321 1djxA 624 2.42e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1nqcA 217 2.47e+01 1go3E 187 2.53e+01 b.40.4.5 65406 1j79A 347 2.53e+01 1j79A c.1.9.4 62675 1jjuA 489 2.55e+01 a.3.1.7 66774 a.3.1.7 66775 b.1.18.14 66776 b.1.18.14 66777 b.61.4.1 66778 1mhyG 169 2.57e+01 1mtyG a.23.3.1 16518 1eybA 471 2.58e+01 1ey2A b.82.1.4 28115 1pbyA 489 2.62e+01 1n6zA 105 2.71e+01 1mvpA 124 2.73e+01 2rspB b.50.1.1 26775 1scfA 273 2.85e+01 1exzA a.26.1.2 16873 1di1A 300 2.90e+01 1di1A a.128.1.4 19446 1cqxA 403 3.01e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 16vpA 366 3.10e+01 16vpA d.180.1.1 42601 1jsqA 582 3.12e+01 i.13.1.1 63270 1i5pA 633 3.16e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1giqA 413 3.17e+01 d.166.1.1 76224 d.166.1.1 76225 1nr0A 611 3.22e+01 1dupA 152 3.29e+01 1dupA b.85.4.1 28351 1euwA 152 3.29e+01 1dupA b.85.4.1 28349 1smpI 101 3.38e+01 1smpI b.61.2.1 27417 3pghA 587 3.52e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1f1oA 431 3.61e+01 1f1oA a.127.1.1 19433 1f2eA 201 3.65e+01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1mo9A 523 3.69e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1miqA 375 3.79e+01 b.50.1.2 79151 1oi0A 124 3.81e+01 1bg1A 722 3.84e+01 1bg1A a.47.1.1 17767 b.2.5.5 22461 d.93.1.1 40527 1h09A 338 3.84e+01 1toh 343 3.86e+01 4pah d.178.1.1 42573 1gcyA 527 3.91e+01 1jdc b.71.1.1 27788 c.1.8.1 28775