# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1asu 162 1.98e-10 1cxqA c.55.3.2 33626 1vsd 152 1.26e-09 1cxqA c.55.3.2 33625 1cxqA 162 4.15e-09 1cxqA c.55.3.2 33621 2itg 163 3.81e-07 1b9dA c.55.3.2 33669 1b9dA 163 1.68e-05 1b9dA c.55.3.2 33649 1exqA 154 1.68e-05 1b9dA c.55.3.2 33646 1hyvA 166 3.74e-05 1b9dA c.55.3.2 61424 1bl3A 160 5.87e-05 1b9dA c.55.3.2 33655 1itg 166 2.11e-04 1b9dA c.55.3.2 33661 1a1tA 55 5.91e-03 1a1tA g.40.1.1 45165 1f6uA 55 8.53e-03 1a1tA g.40.1.1 45164 1mfs 55 9.75e-03 1mfs g.40.1.1 45167 1aaf 55 2.11e-02 1aaf g.40.1.1 45166 1nc8 29 9.25e-02 g.40.1.1 45170 1a6bB 40 1.50e-01 1a6bB g.40.1.1 45172 1dsqA 21 1.52e-01 g.40.1.1 45173 1hvc 203 1.68e-01 1hvc b.50.1.1 26614 1ffkZ 92 2.11e+00 1ffkZ g.41.8.3 45317 1jj22 92 2.36e+00 1ffkZ 1mml 265 3.02e+00 1mml e.8.1.2 43015 1cf9A 753 5.10e+00 1cf9A c.23.16.3 31441 e.5.1.1 42815 1p80A 753 5.58e+00 1nf2A 268 8.41e+00 1qkkA 155 8.41e+00 1dbwA c.23.1.1 31104 1cl4A 60 1.02e+01 1cl4A g.40.1.1 45171 1ofuX 119 1.04e+01 1gseA 221 1.09e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1dsvA 31 1.14e+01 1dsvA g.40.1.1 45174 1ln1A 214 1.45e+01 d.129.3.2 74038 1eduA 149 1.49e+01 1eduA a.118.9.1 19215 1eyhA 144 1.59e+01 1eduA a.118.9.1 19214 1gulA 222 1.69e+01 1pgtA a.45.1.1 17675 c.47.1.5 32969 1f8vA 355 1.69e+01 2bbvA b.10.1.3 23329 1gm5A 780 1.70e+01 a.29.4.1 65298 b.40.4.9 65299 c.37.1.19 65300 c.37.1.19 65301 1dat 174 1.75e+01 2fha a.25.1.1 16677 1igtB 444 1.93e+01 1igtB b.1.1.1 19765 b.1.1.2 20867 b.1.1.2 20868 b.1.1.2 20869 1igtD 444 2.03e+01 1igtB b.1.1.1 19767 b.1.1.2 20871 b.1.1.2 20872 b.1.1.2 20873 1f2eA 201 2.13e+01 1a0fA a.45.1.1 17745 c.47.1.5 33039 1gumA 222 2.28e+01 1pgtA a.45.1.1 17683 c.47.1.5 32977 1exkA 79 2.41e+01 1exkA g.54.1.1 45384 1jxcA 68 2.47e+01 g.3.7.5 77201 1ltlA 279 2.67e+01 1mea 28 2.68e+01 g.41.1.1 45176 1qs8A 329 2.75e+01 1smrA b.50.1.2 26887 1h0aA 158 2.86e+01 a.118.9.1 76434 2omf 340 2.94e+01 2omf f.4.3.1 43749 1k3yA 221 3.38e+01 a.45.1.1 77245 c.47.1.5 77246 1k3lA 221 3.40e+01 a.45.1.1 77229 c.47.1.5 77230 1b4pA 217 3.46e+01 1miqA 375 3.49e+01 b.50.1.2 79151 1xjo 284 3.50e+01 1xjo c.56.5.4 33843 1iz5A 249 3.53e+01 1aew 174 3.54e+01 2fha a.25.1.1 16676 1qvcA 145 3.72e+01 3ullA b.40.4.3 25284 1bu5A 147 3.83e+01 5nul c.23.5.1 31155 1lvk 762 3.83e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1g5gB 481 3.86e+01 f.12.1.1 65157 h.3.2.1 65158 2asi 360 3.87e+01 2rmpA b.50.1.2 26824