Best Alignments for YGR038C-A

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1o4sA/YGR038C-A-1o4sA-global-str2-1.5-adpstyle5.a2m 1.5919e+011.7330e-02 c.67.1.1
1o4sA/YGR038C-A-1o4sA-local-str2-1.5-adpstyle5.a2m 1.5919e+012.1869e-02 c.67.1.1
1mhyG/YGR038C-A-1mhyG-local-str2-1.5-adpstyle5.a2m 5.4997e+002.9793e-02 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-global-str2-1.5-adpstyle5.a2m 5.4997e+004.3572e-02 1mtyG a.23.3.1
1o4sA/YGR038C-A-1o4sA-global-str2-0.3-adpstyle5.a2m 1.5919e+011.8794e-01 c.67.1.1
1o4sA/YGR038C-A-1o4sA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.5919e+012.4509e-01 c.67.1.1
1o4sA/YGR038C-A-1o4sA-global-alpha-0.3-adpstyle5.a2m 1.5919e+012.7585e-01 c.67.1.1
1o4sA/YGR038C-A-1o4sA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.5919e+013.1341e-01 c.67.1.1
1mhyG/YGR038C-A-1mhyG-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.4997e+003.5977e-01 1mtyG a.23.3.1
1mhyG/1mtyG-YGR038C-A-fssp-global-adpstyle5.a2m 5.4997e+001.1106e+00 1mtyG a.23.3.1
1mhyG/1mtyG-YGR038C-A-fssp-local-adpstyle5.a2m 5.4997e+001.8237e+00 1mtyG a.23.3.1
1o4sA/YGR038C-A-1o4sA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.5919e+012.9173e+00 c.67.1.1
1gjyA/YGR038C-A-1gjyA-global-adpstyle1.a2m 1.0103e+013.0581e+00 a.39.1.8
1gjyA/YGR038C-A-1gjyA-global-adpstyle5.a2m 1.0103e+013.0581e+00 a.39.1.8
1mhyG/YGR038C-A-1mhyG-global-alpha-0.3-adpstyle5.a2m 5.4997e+003.1812e+00 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-global-str2-0.3-adpstyle5.a2m 5.4997e+003.5413e+00 1mtyG a.23.3.1
6ptd/2plc-YGR038C-A-fssp-global-adpstyle5.a2m 1.1452e+013.9248e+00 2plc c.1.18.2
5ptd/2plc-YGR038C-A-fssp-global-adpstyle5.a2m 1.2055e+014.0962e+00 2plc c.1.18.2
6ptd/2plc-YGR038C-A-fssp-local-adpstyle5.a2m 1.1452e+014.1164e+00 2plc c.1.18.2
1mhyG/YGR038C-A-1mhyG-global-dssp-ebghstl-0.3-adpstyle5.a2m 5.4997e+004.1667e+00 1mtyG a.23.3.1
4ptd/2plc-YGR038C-A-fssp-global-adpstyle5.a2m 1.2726e+014.2854e+00 2plc c.1.18.2
5ptd/2plc-YGR038C-A-fssp-local-adpstyle5.a2m 1.2055e+014.2962e+00 2plc c.1.18.2
3ptd/2plc-YGR038C-A-fssp-global-adpstyle5.a2m 1.2850e+014.3201e+00 2plc c.1.18.2
7ptd/2plc-YGR038C-A-fssp-global-adpstyle5.a2m 1.2974e+014.3549e+00 2plc c.1.18.2
1gym/2plc-YGR038C-A-fssp-global-adpstyle5.a2m 1.3137e+014.4004e+00 2plc c.1.18.2
1o4sA/YGR038C-A-1o4sA-global-adpstyle1.a2m 1.5919e+014.4572e+00 c.67.1.1
1o4sA/YGR038C-A-1o4sA-global-adpstyle5.a2m 1.5919e+014.4572e+00 c.67.1.1
4ptd/2plc-YGR038C-A-fssp-local-adpstyle5.a2m 1.2726e+014.4946e+00 2plc c.1.18.2
3ptd/2plc-YGR038C-A-fssp-local-adpstyle5.a2m 1.2850e+014.5311e+00 2plc c.1.18.2
7ptd/2plc-YGR038C-A-fssp-local-adpstyle5.a2m 1.2974e+014.5675e+00 2plc c.1.18.2
1mhyG/YGR038C-A-1mhyG-local-str2-0.3-adpstyle5.a2m 5.4997e+004.5906e+00 1mtyG a.23.3.1
1gym/2plc-YGR038C-A-fssp-local-adpstyle5.a2m 1.3137e+014.6153e+00 2plc c.1.18.2
1mhyG/YGR038C-A-1mhyG-local-dssp-ebghstl-0.3-adpstyle5.a2m 5.4997e+004.6618e+00 1mtyG a.23.3.1
1fpn1/1aym1-YGR038C-A-fssp-global-adpstyle5.a2m 1.2891e+014.7422e+00 1aym1
1o4sA/YGR038C-A-1o4sA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.5919e+014.7475e+00 c.67.1.1
1fpn1/1aym1-YGR038C-A-fssp-local-adpstyle5.a2m 1.2891e+014.7969e+00 1aym1
1mhyG/YGR038C-A-1mhyG-local-stride-ebghtl-0.3-adpstyle5.a2m 5.4997e+005.0329e+00 1mtyG a.23.3.1
1o4sA/YGR038C-A-1o4sA-local-str2-0.3-adpstyle5.a2m 1.5919e+015.3717e+00 c.67.1.1
1mhyG/YGR038C-A-1mhyG-global-stride-ebghtl-0.3-adpstyle5.a2m 5.4997e+005.4327e+00 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-local-alpha-0.3-adpstyle5.a2m 5.4997e+005.6227e+00 1mtyG a.23.3.1
1o4sA/YGR038C-A-1o4sA-local-alpha-0.3-adpstyle5.a2m 1.5919e+016.3853e+00 c.67.1.1
1o4sA/YGR038C-A-1o4sA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.5919e+017.4407e+00 c.67.1.1
1gjyA/YGR038C-A-1gjyA-local-adpstyle1.a2m 1.0103e+018.3799e+00 a.39.1.8
1gjyA/YGR038C-A-1gjyA-local-adpstyle5.a2m 1.0103e+018.3799e+00 a.39.1.8
1mhyG/1mhyG-YGR038C-A-global-adpstyle1.a2m 5.4997e+008.4761e+00 1mtyG a.23.3.1
1mhyG/1mhyG-YGR038C-A-global-adpstyle5.a2m 5.4997e+008.4761e+00 1mtyG a.23.3.1
6ptd/YGR038C-A-6ptd-local-adpstyle1.a2m 1.1452e+019.6618e+00 2plc c.1.18.2
6ptd/YGR038C-A-6ptd-local-adpstyle5.a2m 1.1452e+019.6618e+00 2plc c.1.18.2
5ptd/YGR038C-A-5ptd-local-adpstyle1.a2m 1.2055e+011.0248e+01 2plc c.1.18.2
5ptd/YGR038C-A-5ptd-local-adpstyle5.a2m 1.2055e+011.0248e+01 2plc c.1.18.2
1mhyG/YGR038C-A-1mhyG-simplesw-adpstyle5.a2m 5.4997e+001.0465e+01 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-simplesw-adpstyle1.a2m 5.4997e+001.0465e+01 1mtyG a.23.3.1
4ptd/YGR038C-A-4ptd-local-adpstyle5.a2m 1.2726e+011.0906e+01 2plc c.1.18.2
4ptd/YGR038C-A-4ptd-local-adpstyle1.a2m 1.2726e+011.0906e+01 2plc c.1.18.2
3ptd/YGR038C-A-3ptd-local-adpstyle5.a2m 1.2850e+011.1027e+01 2plc c.1.18.2
3ptd/YGR038C-A-3ptd-local-adpstyle1.a2m 1.2850e+011.1027e+01 2plc c.1.18.2
1fpn1/YGR038C-A-1fpn1-local-adpstyle5.a2m 1.2891e+011.1059e+01 1aym1
1fpn1/YGR038C-A-1fpn1-local-adpstyle1.a2m 1.2891e+011.1059e+01 1aym1
7ptd/YGR038C-A-7ptd-local-adpstyle5.a2m 1.2974e+011.1147e+01 2plc c.1.18.2
7ptd/YGR038C-A-7ptd-local-adpstyle1.a2m 1.2974e+011.1147e+01 2plc c.1.18.2
1gym/YGR038C-A-1gym-local-adpstyle1.a2m 1.3137e+011.1303e+01 2plc c.1.18.2
1gym/YGR038C-A-1gym-local-adpstyle5.a2m 1.3137e+011.1303e+01 2plc c.1.18.2
1o4sA/1o4sA-YGR038C-A-global-adpstyle5.a2m 1.5919e+011.1331e+01 c.67.1.1
1o4sA/1o4sA-YGR038C-A-global-adpstyle1.a2m 1.5919e+011.1331e+01 c.67.1.1
1mhyG/1mhyG-YGR038C-A-local-adpstyle5.a2m 5.4997e+001.1720e+01 1mtyG a.23.3.1
1mhyG/1mhyG-YGR038C-A-local-adpstyle1.a2m 5.4997e+001.1720e+01 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-global-adpstyle1.a2m 5.4997e+001.2260e+01 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-global-adpstyle5.a2m 5.4997e+001.2260e+01 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-local-adpstyle5.a2m 5.4997e+001.3745e+01 1mtyG a.23.3.1
1mhyG/YGR038C-A-1mhyG-local-adpstyle1.a2m 5.4997e+001.3745e+01 1mtyG a.23.3.1
1fpn1/YGR038C-A-1fpn1-simplesw-adpstyle1.a2m 1.2891e+011.4060e+01 1aym1
1fpn1/YGR038C-A-1fpn1-simplesw-adpstyle5.a2m 1.2891e+011.4060e+01 1aym1
1gjyA/YGR038C-A-1gjyA-simplesw-adpstyle5.a2m 1.0103e+011.8171e+01 a.39.1.8
1gjyA/YGR038C-A-1gjyA-simplesw-adpstyle1.a2m 1.0103e+011.8171e+01 a.39.1.8
1o4sA/YGR038C-A-1o4sA-local-adpstyle5.a2m 1.5919e+012.0852e+01 c.67.1.1
1o4sA/YGR038C-A-1o4sA-local-adpstyle1.a2m 1.5919e+012.0852e+01 c.67.1.1
1o4sA/YGR038C-A-1o4sA-simplesw-adpstyle1.a2m 1.5919e+012.8398e+01 c.67.1.1
1o4sA/YGR038C-A-1o4sA-simplesw-adpstyle5.a2m 1.5919e+012.8398e+01 c.67.1.1
6ptd/YGR038C-A-6ptd-simplesw-adpstyle1.a2m 1.1452e+013.0263e+01 2plc c.1.18.2
6ptd/YGR038C-A-6ptd-simplesw-adpstyle5.a2m 1.1452e+013.0263e+01 2plc c.1.18.2
5ptd/YGR038C-A-5ptd-simplesw-adpstyle5.a2m 1.2055e+013.1719e+01 2plc c.1.18.2
5ptd/YGR038C-A-5ptd-simplesw-adpstyle1.a2m 1.2055e+013.1719e+01 2plc c.1.18.2
1o4sA/1o4sA-YGR038C-A-local-adpstyle5.a2m 1.5919e+013.2809e+01 c.67.1.1
1o4sA/1o4sA-YGR038C-A-local-adpstyle1.a2m 1.5919e+013.2809e+01 c.67.1.1
6ptd/YGR038C-A-6ptd-global-adpstyle1.a2m 1.1452e+013.3011e+01 2plc c.1.18.2
6ptd/YGR038C-A-6ptd-global-adpstyle5.a2m 1.1452e+013.3011e+01 2plc c.1.18.2
4ptd/YGR038C-A-4ptd-simplesw-adpstyle1.a2m 1.2726e+013.3320e+01 2plc c.1.18.2
4ptd/YGR038C-A-4ptd-simplesw-adpstyle5.a2m 1.2726e+013.3320e+01 2plc c.1.18.2
3ptd/YGR038C-A-3ptd-simplesw-adpstyle1.a2m 1.2850e+013.3631e+01 2plc c.1.18.2
3ptd/YGR038C-A-3ptd-simplesw-adpstyle5.a2m 1.2850e+013.3631e+01 2plc c.1.18.2
7ptd/YGR038C-A-7ptd-simplesw-adpstyle1.a2m 1.2974e+013.3874e+01 2plc c.1.18.2
7ptd/YGR038C-A-7ptd-simplesw-adpstyle5.a2m 1.2974e+013.3874e+01 2plc c.1.18.2
5ptd/YGR038C-A-5ptd-global-adpstyle1.a2m 1.2055e+013.3936e+01 2plc c.1.18.2
5ptd/YGR038C-A-5ptd-global-adpstyle5.a2m 1.2055e+013.3936e+01 2plc c.1.18.2
1gym/YGR038C-A-1gym-simplesw-adpstyle1.a2m 1.3137e+013.4215e+01 2plc c.1.18.2
1gym/YGR038C-A-1gym-simplesw-adpstyle5.a2m 1.3137e+013.4215e+01 2plc c.1.18.2
4ptd/YGR038C-A-4ptd-global-adpstyle1.a2m 1.2726e+013.5906e+01 2plc c.1.18.2
4ptd/YGR038C-A-4ptd-global-adpstyle5.a2m 1.2726e+013.5906e+01 2plc c.1.18.2
3ptd/YGR038C-A-3ptd-global-adpstyle1.a2m 1.2850e+013.6112e+01 2plc c.1.18.2
3ptd/YGR038C-A-3ptd-global-adpstyle5.a2m 1.2850e+013.6112e+01 2plc c.1.18.2
7ptd/YGR038C-A-7ptd-global-adpstyle1.a2m 1.2974e+013.6354e+01 2plc c.1.18.2
7ptd/YGR038C-A-7ptd-global-adpstyle5.a2m 1.2974e+013.6354e+01 2plc c.1.18.2
1gym/YGR038C-A-1gym-global-adpstyle1.a2m 1.3137e+013.6851e+01 2plc c.1.18.2
1gym/YGR038C-A-1gym-global-adpstyle5.a2m 1.3137e+013.6851e+01 2plc c.1.18.2
1fpn1/YGR038C-A-1fpn1-global-adpstyle1.a2m 1.2891e+013.7070e+01 1aym1
1fpn1/YGR038C-A-1fpn1-global-adpstyle5.a2m 1.2891e+013.7070e+01 1aym1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001