# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fftC 204 8.92e-01 1fftC f.25.1.1 43629 1o4sA 389 9.19e-01 c.67.1.1 86620 1fonA 240 1.12e+00 5ptp b.47.1.2 26231 1pu6A 218 2.42e+00 1qkkA 155 2.78e+00 1dbwA c.23.1.1 31104 1l5zA 155 2.97e+00 c.23.1.1 77722 1kf6A 602 3.15e+00 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 1w0hA 204 3.77e+00 1peqA 714 4.44e+00 1v74B 87 4.75e+00 1g8iA 190 4.81e+00 1rec a.39.1.5 60363 1w7bA 339 4.97e+00 1eemA 241 5.15e+00 1eemA a.45.1.1 17717 c.47.1.5 33011 1hlvA 131 5.20e+00 a.4.1.7 65854 a.4.1.7 65855 1ebuA 358 5.51e+00 1ebuA c.2.1.3 30035 d.81.1.2 39950 1iq3A 110 5.66e+00 1iq3A a.39.1.6 62640 1klt 226 6.36e+00 5ptp b.47.1.2 26300 1dw0A 112 6.80e+00 1dw0A a.3.1.1 15911 1lwdA 413 6.91e+00 c.77.1.1 78265 1i37A 260 6.93e+00 1a28A a.123.1.1 61583 1t7rA 269 7.23e+00 1paqA 189 7.43e+00 1qusA 322 7.54e+00 1ltm d.2.1.6 36991 1n83A 270 7.71e+00 a.123.1.1 80276 3rp2A 224 7.71e+00 1a7s b.47.1.2 26298 1mhyB 395 7.98e+00 1mtyB a.25.1.2 16781 1j30A 144 8.43e+00 1ltm 320 8.56e+00 1ltm d.2.1.6 36992 1hw1A 239 8.60e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1izcA 339 8.81e+00 c.1.12.5 83838 1ede 310 9.08e+00 1b6g c.69.1.8 34662 1e2xA 243 9.14e+00 1e2xA a.4.5.6 16113 a.78.1.1 18443 1pjpA 226 9.80e+00 5ptp b.47.1.2 26301 1nn6A 228 1.05e+01 b.47.1.2 85893 1no7A 604 1.14e+01 1ivhA 394 1.26e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1kxpD 458 1.29e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1k8eA 345 1.43e+01 1o17A 345 1.43e+01 a.46.2.1 80765 c.27.1.1 80766 1tqgA 105 1.46e+01 1sr7A 259 1.55e+01 1dp4A 435 1.58e+01 1dp4A c.93.1.1 35710 1dboA 506 1.59e+01 1dbgA b.80.1.4 28034 1pv6A 417 1.60e+01 2ptd 298 1.62e+01 2plc c.1.18.2 29605 1a28A 256 1.66e+01 1a28A a.123.1.1 19290 1dbgA 506 1.69e+01 1dbgA b.80.1.4 28033 1sqnA 261 1.70e+01 1tu3F 79 1.73e+01 1gqeA 365 1.73e+01 e.38.1.1 70351 1omrA 201 1.76e+01 1ouvA 273 1.78e+01 1oe8A 211 1.80e+01 a.45.1.1 86905 c.47.1.5 86906 1t07A 94 1.80e+01 1syyA 346 1.82e+01 1e96B 203 1.88e+01 1e96B a.118.8.1 19211 1ebfA 358 1.96e+01 1ebuA c.2.1.3 30033 d.81.1.2 39948 1exeA 99 1.98e+01 1huuA a.55.1.1 17906 1oshA 232 1.99e+01 1kfuS 184 2.00e+01 a.39.1.8 68574 1rtwA 220 2.02e+01 1b6g 310 2.09e+01 1b6g c.69.1.8 34661 1qu7A 227 2.15e+01 1qu7A h.4.5.1 45789 1hh8A 213 2.15e+01 1e96B a.118.8.1 61042 1i50F 155 2.28e+01 d.78.1.2 61760 1twfF 155 2.28e+01 1odoA 408 2.34e+01 1rec 201 2.40e+01 1rec a.39.1.5 17326 1iqrA 420 2.47e+01 a.99.1.1 66275 c.28.1.1 66276 1xsm 390 2.49e+01 1xsm a.25.1.2 16804 1guxB 152 2.51e+01 1guxB a.74.1.3 18389 1e44B 96 2.54e+01 1e44B b.101.1.1 59220 1h0oA 390 2.58e+01 a.25.1.2 70845 1mhyG 169 2.67e+01 1mtyG a.23.3.1 16518 1lwyA 324 2.68e+01 a.96.1.3 78285 d.129.1.2 78286 1j78A 458 2.68e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 1ko9A 345 2.69e+01 a.96.1.3 68717 d.129.1.2 68718 1dk8A 147 2.77e+01 1agrE a.91.1.1 18548 1qoyA 318 2.78e+01 1qoyA h.4.4.1 45788 1iv8A 720 2.82e+01 b.71.1.1 76842 c.1.8.1 76843 1f4qA 165 2.82e+01 1alvA a.39.1.8 17360 1csn 298 2.86e+01 1csn d.144.1.7 41664 1o0sA 605 2.96e+01 c.2.1.7 86540 c.58.1.3 86541 1ljrA 244 3.06e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1ak5 503 3.08e+01 1ak5 c.1.5.1 28639 1ebmA 317 3.12e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1ddf 127 3.18e+01 1ddf a.77.1.2 18423 1euhA 475 3.22e+01 1euhA c.82.1.1 35369 1iow 306 3.25e+01 1iow c.30.1.2 31713 d.142.1.1 41481 1be3A 446 3.58e+01 1be3A d.185.1.1 58950 d.185.1.1 58951 1i1rB 181 3.60e+01 1i1rB a.26.1.1 61548 1e2kA 331 3.61e+01 1qhiA c.37.1.1 31854 4icb 76 3.62e+01 4icb a.39.1.1 17145 1n45A 233 3.63e+01 a.132.1.1 79981 1w68A 390 3.64e+01 1delA 241 3.64e+01 1dekA c.37.1.1 31844 2ki5A 366 3.64e+01 1qhiA c.37.1.1 31862 1qhiA 366 3.68e+01 1qhiA c.37.1.1 31860 1h99A 224 3.74e+01 a.142.1.1 60814 a.142.1.1 60815 1mijA 152 3.80e+01 a.4.1.1 79150 1rfzA 168 3.82e+01 1qi6A 475 3.92e+01 1euhA c.82.1.1 35373 1kimA 366 3.98e+01 1qhiA c.37.1.1 31864