# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mhyG 169 2.94e+00 1mtyG a.23.3.1 16518 1t0hA 132 3.24e+00 1i1rB 181 3.57e+00 1i1rB a.26.1.1 61548 1e44B 96 4.29e+00 1e44B b.101.1.1 59220 1o26A 232 4.66e+00 d.207.1.1 86566 1har 216 4.79e+00 1rthA e.8.1.2 43025 1m56B 264 6.41e+00 b.6.1.2 74472 f.17.2.1 74473 1g8iA 190 6.64e+00 1rec a.39.1.5 60363 1f4qA 165 6.83e+00 1alvA a.39.1.8 17360 1ehkB 168 6.92e+00 2cuaA b.6.1.2 23041 f.17.2.1 43625 1bed 181 7.53e+00 1fvkA a.44.1.1 17514 c.47.1.4 32808 1gp2G 71 7.76e+00 1tbgE a.137.3.1 19635 1aoiD 99 7.83e+00 1aoiD a.22.1.1 16452 1pu6A 218 8.93e+00 1jchC 551 9.72e+00 b.101.1.1 66495 b.110.1.1 66496 h.4.9.1 66497 1jchA 551 9.72e+00 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1a1iA 90 1.10e+01 1aayA g.37.1.1 44998 g.37.1.1 44999 g.37.1.1 45000 1vrtA 560 1.23e+01 1rthA c.55.3.1 33574 e.8.1.2 43023 2hmiA 558 1.35e+01 1rthA c.55.3.1 33604 e.8.1.2 43106 1kcmA 270 1.48e+01 d.129.3.4 72300 1mslA 109 1.53e+01 1mslA f.16.1.1 43660 1ra6A 461 1.62e+01 1on3A 523 1.66e+01 c.14.1.4 87107 c.14.1.4 87108 1rthA 560 1.69e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1e08D 88 1.76e+01 i.4.1.1 45915 1eysH 259 1.77e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1w0hA 204 1.88e+01 1dttA 560 1.88e+01 1rthA c.55.3.1 33611 e.8.1.2 43088 1qa1A 554 1.94e+01 1tyv b.80.1.6 28047 1i37A 260 1.99e+01 1a28A a.123.1.1 61583 1vjjA 692 2.07e+01 1tyu 543 2.09e+01 1tyv b.80.1.6 28037 1spgB 147 2.10e+01 1cg5B a.1.1.2 15588 1eemA 241 2.13e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1rllA 692 2.14e+01 1tyv 542 2.15e+01 1tyv b.80.1.6 28038 1qq1A 559 2.18e+01 1tyv b.80.1.6 28041 1k94A 165 2.19e+01 a.39.1.8 68333 1t7rA 269 2.27e+01 1l9mA 692 2.30e+01 b.1.18.9 73732 b.1.5.1 73733 b.1.5.1 73734 d.3.1.4 73735 1zaaC 87 2.32e+01 1aayA g.37.1.1 45013 g.37.1.1 45014 g.37.1.1 45015 1qtyT 101 2.34e+01 1fltX b.1.1.4 21769 1ihoA 283 2.37e+01 1ihoA c.26.1.4 62390 1i50B 1224 2.51e+01 e.29.1.2 61755 1fjrA 195 2.56e+01 1fjrA b.102.1.1 59855 1bowA 159 2.60e+01 1bowA d.60.1.1 39528 1xc2A 263 2.62e+01 1twfB 1224 2.63e+01 1qsvA 101 2.70e+01 1fltX b.1.1.4 21771 1lfdA 87 2.76e+01 1lfdA d.15.1.5 37622 1o4sA 389 2.81e+01 c.67.1.1 86620 1kkuA 279 2.88e+01 c.26.1.3 72661 1v2yA 105 2.92e+01 1lxdA 100 3.01e+01 1lfdA d.15.1.5 37624 1pmt 203 3.03e+01 1a0fA a.45.1.1 17740 c.47.1.5 33034 1tsp 559 3.04e+01 1tyv b.80.1.6 28044 1f8mA 429 3.16e+01 1dquA c.1.12.7 29315 1aayA 90 3.27e+01 1aayA g.37.1.1 45001 g.37.1.1 45002 g.37.1.1 45003 1ocyA 198 3.27e+01 d.231.1.1 86817 1guxB 152 3.31e+01 1guxB a.74.1.3 18389 1nz0A 118 3.58e+01 d.14.1.2 86433 1hfeS 123 3.58e+01 1hfeS a.137.4.1 19640 1jhnA 424 3.62e+01 b.29.1.12 70060 b.104.1.1 66722 1pvc4 68 3.74e+01 1pvc4 1bm9A 122 3.75e+01 1bm9A a.4.5.7 16116 1rro 108 3.93e+01 1a75A a.39.1.4 17195 1go3F 107 3.93e+01 a.60.8.2 65407 1x9gA 200 3.95e+01 1hq3B 126 3.95e+01 1aoiD a.22.1.1 16444 1bdfA 235 3.97e+01 1bdfA d.74.3.1 39727 d.181.1.1 42602