# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2tA 231 4.54e-11 1d2tA a.111.1.1 19052 1qi9A 556 1.24e-08 1qhbA a.111.1.2 19053 1vns 609 1.15e-07 1vns a.111.1.3 19061 1vnc 609 1.22e-07 1vns a.111.1.3 19065 1qhbA 596 1.17e-06 1qhbA a.111.1.2 19055 1e19A 314 9.97e-03 1b7bA c.73.1.1 34967 1li5A 461 1.00e-01 1avpA 204 4.43e-01 1avpA d.3.1.7 37132 1b7bA 310 5.27e-01 1b7bA c.73.1.1 34963 1s01 283 8.84e-01 1gci c.41.1.1 32511 1h6kA 757 9.86e-01 a.118.1.2 60675 a.118.1.2 60676 a.118.1.2 60677 1h2vC 771 1.26e+00 1kzhA 555 1.50e+00 1be3D 241 1.89e+00 1be3D a.3.1.3 15955 f.2.1.8 43666 1khdA 345 2.57e+00 1kpkA 473 2.74e+00 f.2.1.13 68776 1jw9B 249 2.75e+00 c.111.1.1 67377 1bccD 241 2.92e+00 1be3D a.3.1.3 15959 f.2.1.8 43698 1be3C 379 4.70e+00 1be3C f.2.1.8 43665 1ie9A 259 5.32e+00 1db1A a.123.1.1 62318 1jplA 171 6.15e+00 a.118.9.2 67027 5ldh 334 6.16e+00 3ldh c.2.1.5 30158 d.162.1.1 42125 1k7qA 479 7.05e+00 1lqpA 135 7.50e+00 1occG 84 7.66e+00 2occG f.2.1.3 43562 1alu 186 7.67e+00 1alu a.26.1.1 16826 1db1A 259 8.36e+00 1db1A a.123.1.1 19329 1fqyA 269 8.53e+00 1fqyA f.2.1.5 43649 1m55A 197 9.12e+00 1sup 275 1.03e+01 1gci c.41.1.1 32510 1jbuH 254 1.09e+01 5ptp b.47.1.2 62856 1il6 185 1.10e+01 1alu a.26.1.1 16827 1lw6E 281 1.11e+01 6prcM 323 1.12e+01 6prcM f.2.1.2 43435 1dxrM 323 1.14e+01 6prcM f.2.1.2 43432 1danH 254 1.21e+01 5ptp b.47.1.2 26292 1ewqA 765 1.28e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1gu9A 177 1.30e+01 a.152.1.1 65540 1go7P 462 1.36e+01 1kncA 177 1.61e+01 a.152.1.1 68703 1qcrD 75 1.68e+01 1qcrD a.3.1.3 15956 f.2.1.8 43674 1a6dA 545 1.83e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 2abd 86 1.83e+01 1aca a.11.1.1 16366 1a0fA 201 1.88e+01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1bjt 793 1.92e+01 1bjt e.11.1.1 43249 1k7gA 479 1.96e+01 1ixh 321 2.00e+01 1ixh c.94.1.1 35761 1fa0A 537 2.00e+01 1fa0B d.58.16.1 39335 e.9.1.2 43229 1lr0A 129 2.06e+01 1gg3A 279 2.06e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1flcA 432 2.12e+01 1flcA b.19.1.3 23837 c.23.10.2 31337 1sbp 310 2.12e+01 1sbp c.94.1.1 35760 1l7vA 326 2.15e+01 2occG 84 2.22e+01 2occG f.2.1.3 43522 1hdmA 201 2.34e+01 1iakA b.1.1.2 21583 d.19.1.1 38157 1go8P 462 2.40e+01 1fe8A 196 2.55e+01 1atzA c.62.1.1 59783 4rnpA 883 2.57e+01 1cezA e.8.1.3 43113 1tlfA 301 2.60e+01 1tlfA c.93.1.1 35687 1k7iA 479 2.75e+01 1lqtA 456 2.77e+01 1k47A 337 2.77e+01 1fftC 204 2.81e+01 1fftC f.2.1.3 43629 1sqc 631 2.82e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859 1pymA 295 2.85e+01 1pymA c.1.12.4 29308 1ekeA 230 2.87e+01 1ekeA c.55.3.1 33572 1qd1A 325 2.91e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1a8q 274 2.95e+01 1brt c.69.1.12 34702 2ezk 99 3.04e+01 2ezk a.4.1.2 16027 1zymA 258 3.11e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 2ezl 99 3.12e+01 2ezk a.4.1.2 16026 1egdA 396 3.19e+01 3mdeA a.29.3.1 16596 e.6.1.1 42857 3fruA 269 3.25e+01 1agdA b.1.1.2 20657 d.19.1.1 38150 1cqwA 295 3.27e+01 1b6g c.69.1.8 34679 1bxm 99 3.29e+01 1bxm a.134.1.1 19618 1lriA 98 3.31e+01 1bn6A 294 3.33e+01 1bn6A c.69.1.8 34678 1ezvD 245 3.41e+01 1be3D a.3.1.3 59546 f.2.1.8 59547 1cv2A 296 3.42e+01 1bn6A c.69.1.8 34680 2occD 147 3.43e+01 1ocrD f.2.1.3 43521 1eza 259 3.47e+01 1zymA a.60.10.1 18113 c.8.1.2 30708 1kf6D 119 3.52e+01 1h54B 754 3.64e+01 a.102.1.4 60636 b.30.4.1 60637 1bn7A 294 3.66e+01 1bn6A c.69.1.8 34677 1ocrD 147 3.72e+01 1ocrD f.2.1.3 43541 1ekrA 161 3.73e+01 1ekrA d.58.21.1 39380 1f3iA 481 3.78e+01 1b7eA c.55.3.4 33679 3vtk 343 3.84e+01 1qhiA c.37.1.1 31884 1fa0B 537 3.91e+01 1fa0B d.58.16.1 39336 e.9.1.2 43230 1kutA 230 3.99e+01 1a0cA 438 4.00e+01 1a0cA c.1.15.3 29529 1gs5A 258 4.00e+01