# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2tA 231 2.44e-10 1d2tA a.111.1.1 19052 1vnc 609 1.73e-08 1vns a.111.1.3 19065 1vns 609 1.96e-08 1vns a.111.1.3 19061 1qi9A 556 2.71e-08 1qhbA a.111.1.2 19053 1qhbA 596 1.41e-06 1qhbA a.111.1.2 19055 1e19A 314 4.17e-02 1b7bA c.73.1.1 34967 1li5A 461 9.04e-02 1avpA 204 2.59e-01 1avpA d.3.1.7 37132 1s01 283 4.80e-01 1gci c.41.1.1 32511 1rypK 198 4.94e-01 d.153.1.4 41879 1b7bA 310 6.71e-01 1b7bA c.73.1.1 34963 1h2vC 771 9.98e-01 1h6kA 757 1.16e+00 a.118.1.2 60675 a.118.1.2 60676 a.118.1.2 60677 1kqfC 217 1.20e+00 1bccD 241 1.33e+00 1be3D a.3.1.3 15959 f.2.1.8 43698 1kpkA 473 1.38e+00 f.2.1.13 68776 1be3D 241 1.71e+00 1be3D a.3.1.3 15955 f.2.1.8 43666 1bjt 793 1.97e+00 1bjt e.11.1.1 43249 1kplA 473 2.16e+00 f.2.1.13 68782 1fqyA 269 2.22e+00 1fqyA f.2.1.5 43649 1kzhA 555 2.44e+00 1m55A 197 2.66e+00 1k7qA 479 3.45e+00 1ekeA 230 3.64e+00 1ekeA c.55.3.1 33572 1fftC 204 3.85e+00 1fftC f.2.1.3 43629 1jw9B 249 4.31e+00 c.111.1.1 67377 1gg3A 279 4.48e+00 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1go7P 462 6.18e+00 1sup 275 6.53e+00 1gci c.41.1.1 32510 1ae7 119 6.57e+00 1poa a.133.1.2 19553 1lw6E 281 6.80e+00 1egdA 396 6.92e+00 3mdeA a.29.3.1 16596 e.6.1.1 42857 1a0fA 201 7.40e+00 1a0fA a.45.1.1 17737 c.47.1.5 33031 1csbB 205 7.52e+00 1theB 1lr0A 129 7.92e+00 1go8P 462 8.56e+00 1a6dA 545 9.05e+00 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 3vtk 343 9.18e+00 1qhiA c.37.1.1 31884 1k7gA 479 9.26e+00 1a0cA 438 9.35e+00 1a0cA c.1.15.3 29529 1ca1 370 9.66e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1rtu 114 1.07e+01 9rnt d.1.1.1 36139 1k7iA 479 1.17e+01 1hyt 316 1.20e+01 1hyt d.92.1.2 59005 1bxm 99 1.23e+01 1bxm a.134.1.1 19618 1lriA 98 1.23e+01 8tlnE 316 1.25e+01 1hyt d.92.1.2 59075 2tmnE 316 1.35e+01 1hyt d.92.1.2 59055 1epuA 591 1.41e+01 1dn1A e.25.1.1 43358 1gu9A 177 1.43e+01 a.152.1.1 65540 1lqtA 456 1.43e+01 1kncA 177 1.47e+01 a.152.1.1 68703 6tmnE 316 1.48e+01 1hyt d.92.1.2 59071 1sqc 631 1.55e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859 6prcM 323 1.72e+01 6prcM f.2.1.2 43435 1dxrM 323 1.74e+01 6prcM f.2.1.2 43432 1ewqA 765 1.76e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1sbp 310 1.77e+01 1sbp c.94.1.1 35760 1aca 86 1.78e+01 1aca a.11.1.1 16367 1f3iA 481 1.78e+01 1b7eA c.55.3.4 33679 1fwkA 296 1.87e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1a16 440 1.87e+01 1az9 c.55.2.1 33548 d.127.1.1 41165 2abd 86 1.91e+01 1aca a.11.1.1 16366 1allA 160 1.92e+01 1qgwC a.1.1.3 15647 1az9 457 1.98e+01 1az9 c.55.2.1 33547 d.127.1.1 41164 1jplA 171 2.03e+01 a.118.9.2 67027 1fa0B 537 2.17e+01 1fa0B d.58.16.1 39336 e.9.1.2 43230 1beo 98 2.19e+01 1bxm a.134.1.1 19619 1ixh 321 2.20e+01 1ixh c.94.1.1 35761 1khdA 345 2.21e+01 1neq 74 2.58e+01 1neq a.35.1.2 17063 1kijA 390 2.58e+01 2occD 147 2.59e+01 1ocrD f.2.1.3 43521 1ocrD 147 2.59e+01 1ocrD f.2.1.3 43541 1dioG 173 2.66e+01 1dioG a.23.2.1 16496 1exzA 141 2.69e+01 1exzA a.26.1.2 16877 1k8kD 300 2.85e+01 d.198.2.1 68309 d.198.2.1 68310 1sfcA 96 2.89e+01 1sfcA h.1.15.1 45643 1plc 99 2.92e+01 1plc b.6.1.1 22846 2pcy 99 2.94e+01 1plc b.6.1.1 22849 1fbaA 361 3.08e+01 1fbaA c.1.10.1 29120 1e9xA 455 3.16e+01 1ea1A a.104.1.1 18969 1hb6A 86 3.16e+01 2ezl 99 3.35e+01 2ezk a.4.1.2 16026 1tlfA 301 3.40e+01 1tlfA c.93.1.1 35687 1c02A 166 3.57e+01 1qspA a.24.10.2 16633 1ekrA 161 3.60e+01 1ekrA d.58.21.1 39380 1f82A 424 3.71e+01 1f82A d.92.1.7 40307 1pmi 440 3.74e+01 1pmi b.82.1.3 28114 1lqpA 135 3.74e+01 1i1iP 681 3.75e+01 1i1iP d.92.1.5 40297 1jihA 531 3.79e+01 e.8.1.5 66740 1kvkA 395 3.88e+01 2ezk 99 3.89e+01 2ezk a.4.1.2 16027 1h72C 296 3.98e+01 d.14.1.5 60712 d.58.26.1 60713 1gdhA 320 3.99e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355