# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2tA 231 2.28e-10 1d2tA a.111.1.1 19052 1qi9A 556 1.14e-08 1qhbA a.111.1.2 19053 1vnc 609 6.96e-08 1vns a.111.1.3 19065 1vns 609 7.26e-08 1vns a.111.1.3 19061 1qhbA 596 1.15e-05 1qhbA a.111.1.2 19055 1e19A 314 6.38e-02 1b7bA c.73.1.1 34967 1s01 283 5.00e-01 1gci c.41.1.1 32511 1b7bA 310 1.23e+00 1b7bA c.73.1.1 34963 1rypK 198 1.31e+00 d.153.1.4 41879 1be3D 241 1.41e+00 1be3D a.3.1.3 15955 f.2.1.8 43666 1li5A 461 1.57e+00 1avpA 204 1.65e+00 1avpA d.3.1.7 37132 1bccD 241 1.83e+00 1be3D a.3.1.3 15959 f.2.1.8 43698 1fftC 204 2.44e+00 1fftC f.2.1.3 43629 1gg3A 279 2.49e+00 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1k7qA 479 2.92e+00 1kzhA 555 3.00e+00 1a16 440 4.06e+00 1az9 c.55.2.1 33548 d.127.1.1 41165 1az9 457 4.19e+00 1az9 c.55.2.1 33547 d.127.1.1 41164 1ca1 370 4.75e+00 1ca1 a.124.1.1 19340 b.12.1.3 23648 1go7P 462 5.58e+00 1m55A 197 5.94e+00 1lqpA 135 6.76e+00 1jw9B 249 6.83e+00 c.111.1.1 67377 1ekeA 230 7.56e+00 1ekeA c.55.3.1 33572 1go8P 462 7.70e+00 1k7gA 479 7.78e+00 1sup 275 7.85e+00 1gci c.41.1.1 32510 1k7iA 479 7.97e+00 1danH 254 7.97e+00 5ptp b.47.1.2 26292 1kpkA 473 8.10e+00 f.2.1.13 68776 1lw6E 281 8.21e+00 1fct 32 9.02e+00 1fct j.36.1.1 46283 1bjt 793 1.03e+01 1bjt e.11.1.1 43249 1tlfA 301 1.13e+01 1tlfA c.93.1.1 35687 1jbuH 254 1.14e+01 5ptp b.47.1.2 62856 1j4nA 271 1.21e+01 1csbB 205 1.27e+01 1theB 1fqyA 269 1.30e+01 1fqyA f.2.1.5 43649 1khdA 345 1.47e+01 2tmnE 316 1.58e+01 1hyt d.92.1.2 59055 1hyt 316 1.59e+01 1hyt d.92.1.2 59005 6tmnE 316 1.59e+01 1hyt d.92.1.2 59071 8tlnE 316 1.59e+01 1hyt d.92.1.2 59075 1lqtA 456 1.64e+01 1f3iA 481 1.70e+01 1b7eA c.55.3.4 33679 1c4kA 730 1.72e+01 1ordA c.23.7.1 31273 c.67.1.5 34502 d.125.1.1 41123 2abd 86 1.75e+01 1aca a.11.1.1 16366 1aca 86 1.81e+01 1aca a.11.1.1 16367 1e5mA 416 1.90e+01 1dd8A c.95.1.1 58973 c.95.1.1 58974 1gu9A 177 2.01e+01 a.152.1.1 65540 1kncA 177 2.15e+01 a.152.1.1 68703 1fe8A 196 2.17e+01 1atzA c.62.1.1 59783 1hb6A 86 2.26e+01 1bxm 99 2.26e+01 1bxm a.134.1.1 19618 1jh6A 189 2.26e+01 d.61.1.1 66707 1a0fA 201 2.34e+01 1a0fA a.45.1.1 17737 c.47.1.5 33031 1lriA 98 2.38e+01 1iqpA 327 2.40e+01 a.80.1.1 62649 c.37.1.13 62650 1dioG 173 2.43e+01 1dioG a.23.2.1 16496 1ewqA 765 2.47e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1lr0A 129 2.48e+01 1a8q 274 2.72e+01 1brt c.69.1.12 34702 1il6 185 2.92e+01 1alu a.26.1.1 16827 1e6cA 173 2.97e+01 1shkA c.37.1.2 59296 1ixh 321 2.99e+01 1ixh c.94.1.1 35761 1dpuA 99 2.99e+01 1dpuA a.4.5.16 16150 1ekrA 161 3.09e+01 1ekrA d.58.21.1 39380 2gsq 202 3.11e+01 1pd21 a.45.1.1 17715 c.47.1.5 33009 1shkA 173 3.25e+01 1shkA c.37.1.2 31932 1a6dA 545 3.27e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1epuA 591 3.30e+01 1dn1A e.25.1.1 43358 1jplA 171 3.40e+01 a.118.9.2 67027 2shkA 173 3.52e+01 1shkA c.37.1.2 31934 1jjuC 79 3.83e+01 a.137.9.1 66780 1k47A 337 3.85e+01 1pnkA 209 3.86e+01 1ajqA d.153.1.2 41839 1neq 74 3.94e+01 1neq a.35.1.2 17063 1ajqA 209 3.98e+01 1ajqA d.153.1.2 41840