# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zaaC 87 4.89e-02 1aayA g.37.1.1 45013 g.37.1.1 45014 g.37.1.1 45015 1aayA 90 5.00e-02 1aayA g.37.1.1 45001 g.37.1.1 45002 g.37.1.1 45003 1a1iA 90 8.64e-02 1aayA g.37.1.1 44998 g.37.1.1 44999 g.37.1.1 45000 1g2fC 90 1.86e-01 k.12.1.1 60222 1llmC 88 8.33e-01 g.37.1.1 91059 g.37.1.1 91060 2ashA 381 1.60e+00 1jnrB 150 1.70e+00 d.58.1.5 66969 1tc5A 194 3.31e+00 c.110.1.1 106752 1wthD 391 3.35e+00 1tqnA 486 3.96e+00 a.104.1.1 107238 1xaoA 121 4.01e+00 1qlaB 239 4.75e+00 1qlaB a.1.2.1 15679 d.15.4.2 37707 1xxsA 122 4.88e+00 1zcjA 463 5.10e+00 2aw4Z 70 5.26e+00 1s48A 609 5.31e+00 e.8.1.4 98475 1uyjA 296 6.09e+00 f.8.1.2 108143 1plfA 72 6.26e+00 1tvxA d.9.1.1 37373 1a0hA 159 6.61e+00 1a0hA b.47.1.2 26229 g.14.1.1 44655 1hn6A 110 7.43e+00 g.61.1.1 76721 1m3sA 186 7.63e+00 c.80.1.3 78573 2cszA 76 7.67e+00 1lwdA 413 7.81e+00 c.77.1.1 78265 1udh 244 9.09e+00 3eugA c.18.1.1 31015 1k28D 391 9.58e+00 b.106.1.1 68052 b.106.1.1 68053 1yk3A 210 1.05e+01 1wf9A 107 1.08e+01 1g0hA 252 1.08e+01 1dk4A e.7.1.1 60171 1humA 69 1.12e+01 1b3aA d.9.1.1 37397 1b6rA 355 1.28e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1iznA 286 1.37e+01 e.43.1.1 83847 1g8oA 310 1.39e+01 1g8oA c.68.1.9 60375 2bl5A 140 1.47e+01 1udg 244 1.47e+01 3eugA c.18.1.1 31016 1zmbA 290 1.57e+01 1t71A 281 1.57e+01 1clc 639 1.58e+01 1clc a.102.1.2 18835 b.1.18.2 21872 1lldA 319 1.76e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1ny6A 267 1.79e+01 c.37.1.20 92321 1dl6A 58 1.80e+01 1dl6A g.41.3.1 45207 2bsdA 264 1.80e+01 1yc5A 246 1.84e+01 1rlyA 60 1.84e+01 g.41.3.1 104988 1ui0A 205 1.87e+01 c.18.1.2 99411 1y4lA 121 1.87e+01 1lzlA 323 1.93e+01 c.69.1.2 78306 1twdA 256 1.96e+01 c.1.30.1 107397 1meyC 87 1.96e+01 2gliA k.12.1.1 46430 1k1gA 131 1.96e+01 d.51.1.1 68015 2eveA 157 2.01e+01 1e1oA 504 2.10e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1dxrC 336 2.19e+01 6prcC a.138.1.2 19670 1ois 223 2.26e+01 1a36A e.15.1.1 43267 1ia9A 280 2.40e+01 1ia9A d.144.1.5 62113 1ff9A 450 2.43e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1oyc 400 2.50e+01 1oyc c.1.4.1 28603 1oya 400 2.55e+01 1oyc c.1.4.1 28604 1ppa 121 2.55e+01 1poa a.133.1.2 19550 1oyb 400 2.55e+01 1oyc c.1.4.1 28602 1vqvA 306 2.56e+01 1pbyC 79 2.67e+01 a.137.9.1 94423 1tfi 50 2.72e+01 1tfi g.41.3.1 45204 1scs 237 2.73e+01 1nls b.29.1.1 23930 1nls 237 2.74e+01 1nls b.29.1.1 23928 6prcC 336 2.82e+01 6prcC a.138.1.2 19671 1q41A 424 2.84e+01 d.144.1.7 95774 1jjuC 79 2.95e+01 a.137.9.1 66780 1j1bA 420 3.18e+01 d.144.1.7 90758 1tzpA 255 3.41e+01 d.65.1.3 107520 1mtnC 97 3.44e+01 5ptp 2a4hA 126 3.44e+01 1jmxG 79 3.57e+01 a.137.9.1 66907 1h70A 255 3.60e+01 1h70A d.126.1.3 60711 1s8iA 121 3.60e+01 a.133.1.2 98735 1u3wA 374 3.63e+01 1f75A 249 3.65e+01 1f75A c.101.1.1 59662 1b6sA 355 3.65e+01 1b6rA b.84.2.1 28242 c.30.1.1 31649 d.142.1.2 41494 1i81A 83 3.71e+01 1d3bB b.38.1.1 61930 1qw2A 102 3.75e+01 d.249.1.1 96456 1nbcA 155 3.83e+01 1nbcA b.2.2.2 22390 1jpdX 324 3.97e+01 c.1.11.2 67014 d.54.1.1 67015