# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1aayA 90 1.36e-01 1aayA g.37.1.1 45001 g.37.1.1 45002 g.37.1.1 45003 1zaaC 87 1.48e-01 1aayA g.37.1.1 45013 g.37.1.1 45014 g.37.1.1 45015 1a1iA 90 1.57e-01 1aayA g.37.1.1 44998 g.37.1.1 44999 g.37.1.1 45000 1jnrB 150 3.64e-01 d.58.1.5 66969 1a0hA 159 5.35e-01 1a0hA b.47.1.2 26229 g.14.1.1 44655 1g2fC 90 1.23e+00 k.12.1.1 60222 2a4hA 126 1.63e+00 1llmC 88 2.02e+00 g.37.1.1 91059 g.37.1.1 91060 1g8oA 310 3.13e+00 1g8oA c.68.1.9 60375 1vr7A 142 3.45e+00 1xxsA 122 5.91e+00 1gx4A 289 7.03e+00 c.68.1.9 83362 1iqyA 638 8.71e+00 b.30.2.1 76763 d.17.2.1 76764 d.17.2.1 76765 1ui7A 638 8.89e+00 b.30.2.1 99413 d.17.2.1 99414 d.17.2.1 99415 1ivwA 638 8.95e+00 b.30.2.1 71456 d.17.2.1 71457 d.17.2.1 71458 1w6gA 646 9.26e+00 1rjoA 646 9.38e+00 1ui8A 638 9.46e+00 b.30.2.1 99419 d.17.2.1 99420 d.17.2.1 99421 1avk 638 9.66e+00 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 1o7qA 289 1.08e+01 c.68.1.9 92626 1tzpA 255 1.12e+01 d.65.1.3 107520 1eeqA 114 1.16e+01 32c2A b.1.1.1 20544 1wthD 391 1.16e+01 1eeuA 114 1.17e+01 32c2A b.1.1.1 20546 1siiA 646 1.21e+01 b.30.2.1 105578 d.17.2.1 105579 d.17.2.1 105580 1k4vA 289 1.22e+01 c.68.1.9 72066 2aw4R 103 1.22e+01 1tluA 130 1.24e+01 d.156.1.2 107139 1qbhA 101 1.28e+01 1g3fA g.52.1.1 45374 2cszA 76 1.43e+01 1jfuA 186 1.48e+01 c.47.1.10 62940 2aw4Z 70 1.48e+01 1b6rA 355 1.55e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1plfA 72 1.56e+01 1tvxA d.9.1.1 37373 1tfi 50 1.60e+01 1tfi g.41.3.1 45204 1k28D 391 1.67e+01 b.106.1.1 68052 b.106.1.1 68053 1rlyA 60 1.68e+01 g.41.3.1 104988 1taq 832 1.70e+01 1taq a.60.7.1 18082 c.120.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1yk3A 210 1.78e+01 2bl5A 140 1.80e+01 1meyC 87 1.97e+01 2gliA k.12.1.1 46430 4rxn 54 2.17e+01 1rb9 g.41.5.1 45226 1nciA 110 2.22e+01 1edhA b.1.6.1 22191 1y4hA 188 2.29e+01 1rhoC 145 2.51e+01 1rhoA b.1.18.8 21901 1zfuA 40 2.54e+01 1pxvA 183 2.55e+01 d.3.1.1 95301 1y4lA 121 2.73e+01 1ois 223 2.77e+01 1a36A e.15.1.1 43267 1ncg 110 2.85e+01 1edhA b.1.6.1 22193 1wf9A 107 2.94e+01 1n0wB 35 2.96e+01 j.97.1.1 79773 1xaoA 121 3.05e+01 1pv9A 348 3.11e+01 c.55.2.1 95157 d.127.1.1 95158 1tc5A 194 3.11e+01 c.110.1.1 106752 1fb6A 105 3.17e+01 1thx c.47.1.1 32739 1nozA 388 3.20e+01 1clqA c.55.3.5 33715 1b6sA 355 3.27e+01 1b6rA b.84.2.1 28242 c.30.1.1 31649 d.142.1.2 41494 1yc61 154 3.32e+01 1jmxG 79 3.35e+01 a.137.9.1 66907 1tw6A 133 3.35e+01 1k1gA 131 3.47e+01 d.51.1.1 68015 1hzdA 272 3.48e+01 c.14.1.3 65969 1gd8A 118 3.52e+01 d.188.1.1 60445 1dl6A 58 3.57e+01 1dl6A g.41.3.1 45207 1yr0A 175 3.72e+01 1lldA 319 3.88e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1udg 244 3.99e+01 3eugA c.18.1.1 31016