# List of top-scoring protein chains for t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1lba	146	4.40e-01	1lba	d.118.1.1	41062
1aroL	151	4.70e-01	1lba	d.118.1.1	41063
1a3gA	308	1.71e+00	1daaA	e.17.1.1	43286
1i1kA	309	1.72e+00	1daaA	e.17.1.1	61533
1c17M	177	2.95e+00	1c17M	f.2.1.4	43648
1j79A	347	3.66e+00	1j79A	c.1.9.4	62675
1g10A	102	6.26e+00	1g10A	d.137.1.1	60191
1ig9A	903	7.67e+00	1clqA	c.55.3.5	62367
				e.8.1.1	62368
1clqA	903	7.70e+00	1clqA	c.55.3.5	33717
				e.8.1.1	43006
1e9kA	38	8.31e+00		j.87.1.1	64826
1c07A	95	9.53e+00	1eh2	a.39.1.6	17337
1jyoA	130	1.09e+01		d.198.1.1	67483
1kqfC	217	1.10e+01			
1gtzA	156	1.15e+01			
1d0iA	156	1.18e+01	2dhqA	c.23.13.1	31383
1loqA	228	1.21e+01			
1nqbA	256	1.47e+01	1mfa	b.1.1.1	20042
				b.1.1.1	20043
1km6A	247	1.49e+01			
1klyA	247	1.49e+01			
1km4A	247	1.57e+01			
1losA	224	1.62e+01			
1dv7A	227	1.62e+01	1dvjA	c.1.2.3	28550
1lorA	228	1.64e+01			
1lolA	229	1.66e+01			
1klzA	247	1.66e+01			
1im8A	244	1.72e+01		c.66.1.14	66212
1be3I	78	1.79e+01	1be3I		
1k5dB	201	1.82e+01		b.55.1.3	68169
1rmd	116	1.84e+01	1rmd	g.37.1.1	45025
				g.44.1.1	45322
1km1A	247	1.87e+01			
1dhs	344	1.91e+01	1dhs	c.31.1.1	31727
1km0A	247	1.92e+01			
1ggvA	232	1.93e+01	1din	c.69.1.9	34683
1bv8A	138	1.94e+01	1ayoA	b.2.4.1	22430
1dvjA	246	2.00e+01	1dvjA	c.1.2.3	28546
1dvjC	246	2.00e+01	1dvjA	c.1.2.3	28548
1km2A	247	2.01e+01			
1km3A	247	2.03e+01			
1km5A	247	2.21e+01			
1din	234	2.23e+01	1din	c.69.1.9	34682
1mma	762	2.46e+01	1lvk	b.34.3.1	24587
				c.37.1.9	32184
1fmvA	761	2.51e+01	1lvk	b.34.3.1	24580
				c.37.1.9	32177
1d0yA	761	2.52e+01	1lvk	b.34.3.1	24581
				c.37.1.9	32178
1jwyA	776	2.52e+01		b.34.3.1	67399
				c.37.1.9	67400
1qlaB	239	2.53e+01	1qlaB	a.1.2.1	15679
				d.15.4.2	37707
1hllA	32	2.54e+01			
1bn7A	294	2.65e+01	1bn6A	c.69.1.8	34677
1bn6A	294	2.65e+01	1bn6A	c.69.1.8	34678
1cqwA	295	2.70e+01	1b6g	c.69.1.8	34679
1ykfA	352	2.78e+01	1pedA	b.35.1.2	24757
				c.2.1.1	29773
1ho9A	32	2.82e+01			
1qe3A	489	3.01e+01	2bce	c.69.1.1	34630
1cbkA	160	3.28e+01	1hka	d.58.30.1	39435
1em9A	154	3.30e+01	1d1dA	a.73.1.1	18333
1fvpA	231	3.47e+01	1nfp	c.1.16.2	29556
1c7iA	489	3.58e+01	1thg	c.69.1.1	34632
1vom	762	3.65e+01	1lvk	b.34.3.1	24577
				c.37.1.9	32174
1mnd	762	3.65e+01	1lvk	b.34.3.1	24591
				c.37.1.9	32188