# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l2rA 458 1.03e+00 1l2qA 458 1.03e+00 1c4xA 285 1.05e+00 1c4xA c.69.1.10 34684 1a3gA 308 1.31e+00 1daaA e.17.1.1 43286 1i1kA 309 1.97e+00 1daaA e.17.1.1 61533 1gtzA 156 3.73e+00 1d0iA 156 3.74e+00 2dhqA c.23.13.1 31383 1hlrA 907 3.91e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1lba 146 5.09e+00 1lba d.118.1.1 41062 1qc5A 192 5.10e+00 1aoxA c.62.1.1 34147 1oya 400 5.85e+00 1oyc c.1.4.1 28604 1kqfC 217 6.85e+00 1bxkA 355 7.00e+00 1bxkA c.2.1.2 29803 1oyb 400 7.40e+00 1oyc c.1.4.1 28602 1noyA 388 7.56e+00 1clqA c.55.3.5 33713 1c4zA 358 8.12e+00 1c4zA d.148.1.1 41766 1jjiA 311 8.24e+00 c.69.1.2 66766 1jqgA 433 1.03e+01 1jmoA 480 1.05e+01 1dhpA 292 1.06e+01 1dhpA c.1.10.1 29097 1ggvA 232 1.18e+01 1din c.69.1.9 34683 1oyc 400 1.21e+01 1oyc c.1.4.1 28603 1hllA 32 1.35e+01 1ako 268 1.36e+01 1ako d.151.1.1 41779 1l5jA 865 1.41e+01 1d8cA 723 1.45e+01 1d8cA c.1.13.1 29325 1inlA 296 1.52e+01 c.66.1.17 66220 1jq3A 296 1.55e+01 c.66.1.17 67079 1qasA 622 1.59e+01 1djxB a.39.1.7 17340 b.7.1.1 23157 c.1.18.1 29585 3dfr 162 1.66e+01 3dfr c.71.1.1 34880 1qatB 622 1.73e+01 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1lxtA 561 1.84e+01 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1djxA 624 1.84e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1djxB 624 1.91e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1xnb 185 2.04e+01 1axkA b.29.1.11 24308 1bpv 112 2.04e+01 1bpv b.1.2.1 22071 1qe3A 489 2.05e+01 2bce c.69.1.1 34630 1jy5A 212 2.09e+01 1vtp 26 2.20e+01 j.36.2.1 46284 1epxA 370 2.39e+01 1fbaA c.1.10.1 29150 1e9kA 38 2.40e+01 j.87.1.1 64826 1ao8 162 2.44e+01 3dfr c.71.1.1 34883 1nozA 388 2.49e+01 1clqA c.55.3.5 33715 1hizA 379 2.57e+01 c.1.8.3 65841 1im8A 244 2.59e+01 c.66.1.14 66212 1ayx 492 2.59e+01 1ayx a.102.1.1 18825 1g73A 162 2.60e+01 1fewA a.7.4.1 16332 1wad 112 2.69e+01 3cyr a.138.1.1 19658 1kewA 361 2.72e+01 c.2.1.2 68544 1jyaA 130 2.88e+01 d.198.1.1 67453 1k8kD 300 2.98e+01 d.198.2.1 68309 d.198.2.1 68310 1di0A 158 3.04e+01 1di0A c.16.1.1 30957 3pmgA 561 3.19e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1din 236 3.42e+01 1din c.69.1.9 34682 1cb0A 283 3.43e+01 1cb0A c.56.2.1 33790 1qhtA 775 3.46e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1ecpA 238 3.71e+01 1ecpA c.56.2.1 33775 1cs1C 386 3.81e+01 1ibjA c.67.1.3 34401 1rmd 116 3.83e+01 1rmd g.37.1.1 45025 g.44.1.1 45322 1k4wA 252 3.90e+01