# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1a3gA 308 2.63e-01 1daaA e.17.1.1 43286 1l2qA 458 4.40e-01 1l2rA 458 4.41e-01 1i1kA 309 9.73e-01 1daaA e.17.1.1 61533 3pmgA 561 1.54e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1jqgA 433 2.85e+00 1qatB 622 2.88e+00 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1oya 400 2.88e+00 1oyc c.1.4.1 28604 1oyc 400 3.18e+00 1oyc c.1.4.1 28603 1qasA 622 3.35e+00 1djxB a.39.1.7 17340 b.7.1.1 23157 c.1.18.1 29585 1djxB 624 3.48e+00 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1djxA 624 3.54e+00 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1c4xA 285 3.57e+00 1c4xA c.69.1.10 34684 1hlrA 907 3.95e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1qc5A 192 3.98e+00 1aoxA c.62.1.1 34147 1oyb 400 4.01e+00 1oyc c.1.4.1 28602 1c4zA 358 4.37e+00 1c4zA d.148.1.1 41766 1ggvA 232 4.85e+00 1din c.69.1.9 34683 1lba 146 4.86e+00 1lba d.118.1.1 41062 1dhpA 292 5.01e+00 1dhpA c.1.10.1 29097 1gtzA 156 5.50e+00 1lxtA 561 5.77e+00 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1d0iA 156 5.86e+00 2dhqA c.23.13.1 31383 1kqfC 217 6.61e+00 1noyA 388 7.18e+00 1clqA c.55.3.5 33713 2atjA 308 7.50e+00 1bgp a.93.1.1 18675 1bxkA 355 7.60e+00 1bxkA c.2.1.2 29803 7atjA 308 7.61e+00 1bgp a.93.1.1 18673 1e9kA 38 7.63e+00 j.87.1.1 64826 1l5jA 865 8.32e+00 1xnb 185 9.68e+00 1axkA b.29.1.11 24308 1qe3A 489 1.00e+01 2bce c.69.1.1 34630 1cb0A 283 1.10e+01 1cb0A c.56.2.1 33790 1fj2A 232 1.11e+01 1auoA c.69.1.14 34720 1wad 112 1.24e+01 3cyr a.138.1.1 19658 1jmoA 480 1.27e+01 1din 236 1.31e+01 1din c.69.1.9 34682 1jjiA 311 1.32e+01 c.69.1.2 66766 1ako 268 1.59e+01 1ako d.151.1.1 41779 1qmhA 347 1.62e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1epxA 370 1.62e+01 1fbaA c.1.10.1 29150 1nozA 388 1.67e+01 1clqA c.55.3.5 33715 1ao8 162 1.74e+01 3dfr c.71.1.1 34883 1jy5A 212 1.76e+01 1imjA 210 1.77e+01 1d8cA 723 2.01e+01 1d8cA c.1.13.1 29325 1hllA 32 2.07e+01 1cs1C 386 2.08e+01 1ibjA c.67.1.3 34401 1inlA 296 2.09e+01 c.66.1.17 66220 1qo2A 241 2.14e+01 1qo2A c.1.2.1 28533 1di0A 158 2.15e+01 1di0A c.16.1.1 30957 1jq3A 296 2.27e+01 c.66.1.17 67079 3dfr 162 2.28e+01 3dfr c.71.1.1 34880 1obr 326 2.29e+01 1aye c.56.5.2 33828 1vtp 26 2.33e+01 j.36.2.1 46284 1cs1A 386 2.36e+01 1ibjA c.67.1.3 34399 1b6g 310 2.49e+01 1b6g c.69.1.8 34661 1ede 310 2.54e+01 1b6g c.69.1.8 34662 1kewA 361 2.61e+01 c.2.1.2 68544 1ddzA 496 2.99e+01 1ddzA c.53.2.1 33372 c.53.2.1 33373 1qhtA 775 3.27e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1pah 308 3.30e+01 4pah d.178.1.1 42578 1ax4A 467 3.31e+01 1ax4A c.67.1.2 34391 1bmlC 362 3.35e+01 1bmlC d.15.5.1 37729 d.15.5.1 37730 d.15.5.1 37731 1k4wA 252 3.41e+01 1eokA 290 3.48e+01 1eokA c.1.8.5 28991 1bpv 112 3.54e+01 1bpv b.1.2.1 22071 1j8uA 325 3.56e+01 4pah 308 3.64e+01 4pah d.178.1.1 42576 1epuA 591 3.68e+01 1dn1A e.25.1.1 43358 1fbnA 230 3.72e+01 1fbnA c.66.1.3 34181 1dmwA 307 3.83e+01 4pah d.178.1.1 42580 1akr 147 3.87e+01 1rcf c.23.5.1 31152