Best Alignments for YGR034W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1s72T/YGR034W-1s72T-global-str2-1.5-adpstyle5.a2m 5.3475e-172.3237e-25
1jj2S/YGR034W-1jj2S-global-str-1.5-adpstyle5.a2m 1.0955e-163.8456e-25 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-global-str2-1.5-adpstyle5.a2m 1.0955e-164.8895e-25 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-local-str2-1.5-adpstyle5.a2m 5.3475e-177.9583e-25
1jj2S/YGR034W-1jj2S-local-str2-1.5-adpstyle5.a2m 1.0955e-161.5719e-24 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-local-str-1.5-adpstyle5.a2m 1.0955e-163.2457e-24 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 5.3475e-178.5621e-23
1s1iU/YGR034W-1s1iU-simplesw-adpstyle1.a2m 1.8541e-121.2111e-22
1s1iU/YGR034W-1s1iU-simplesw-adpstyle5.a2m 1.8541e-121.2111e-22
1jj2S/YGR034W-1jj2S-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.0955e-161.6849e-22 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-global-str2-0.3-adpstyle5.a2m 5.3475e-172.0682e-22
1s72T/YGR034W-1s72T-global-alpha-0.3-adpstyle5.a2m 5.3475e-172.6856e-22
1jj2S/YGR034W-1jj2S-global-str2-0.3-adpstyle5.a2m 1.0955e-163.9855e-22 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-global-alpha-0.3-adpstyle5.a2m 1.0955e-164.0508e-22 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-global-str-0.3-adpstyle5.a2m 1.0955e-164.8403e-22 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-global-dssp-ebghstl-0.3-adpstyle5.a2m 5.3475e-176.4587e-22
1s72T/YGR034W-1s72T-global-stride-ebghtl-0.3-adpstyle5.a2m 5.3475e-177.6902e-22
1jj2S/YGR034W-1jj2S-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.0955e-161.1752e-21 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-global-stride-ebghtl-0.3-adpstyle5.a2m 1.0955e-161.3394e-21 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-local-str2-0.3-adpstyle5.a2m 5.3475e-174.8724e-21
1s72T/YGR034W-1s72T-local-alpha-0.3-adpstyle5.a2m 5.3475e-176.5764e-21
1jj2S/YGR034W-1jj2S-local-str2-0.3-adpstyle5.a2m 1.0955e-169.7900e-21 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-local-str-0.3-adpstyle5.a2m 1.0955e-169.7900e-21 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-local-alpha-0.3-adpstyle5.a2m 1.0955e-161.1107e-20 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-str2-1.5-adpstyle5.a2m 8.0212e-151.1666e-20 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-alpha-0.3-adpstyle5.a2m 8.0212e-151.3083e-20 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-local-dssp-ebghstl-0.3-adpstyle5.a2m 5.3475e-171.4117e-20
1s72T/YGR034W-1s72T-local-stride-ebghtl-0.3-adpstyle5.a2m 5.3475e-171.4703e-20
1s72T/YGR034W-1s72T-global-adpstyle5.a2m 5.3475e-172.7046e-20
1s72T/YGR034W-1s72T-global-adpstyle1.a2m 5.3475e-172.7046e-20
1jj2S/YGR034W-1jj2S-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.0955e-162.7206e-20 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-local-stride-ebghtl-0.3-adpstyle5.a2m 1.0955e-162.8306e-20 1ffkQ b.34.5.1
1jj2S/1jj2S-YGR034W-global-adpstyle5.a2m 1.0955e-164.7821e-20 1ffkQ b.34.5.1
1jj2S/1jj2S-YGR034W-global-adpstyle1.a2m 1.0955e-164.7821e-20 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-str2-1.5-adpstyle5.a2m 8.0212e-155.7156e-20 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-global-adpstyle1.a2m 1.0955e-165.7787e-20 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-global-adpstyle5.a2m 1.0955e-165.7787e-20 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-str2-0.3-adpstyle5.a2m 8.0212e-156.3689e-20 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 8.0212e-157.0883e-20 1ffkQ b.34.5.1
1s72T/1s72T-YGR034W-global-adpstyle1.a2m 5.3475e-177.7090e-20
1s72T/1s72T-YGR034W-global-adpstyle5.a2m 5.3475e-177.7090e-20
1ffkQ/YGR034W-1ffkQ-global-str-0.3-adpstyle5.a2m 8.0212e-151.2102e-19 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-stride-ebghtl-0.3-adpstyle5.a2m 8.0212e-151.2484e-19 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-dssp-ebghstl-0.3-adpstyle5.a2m 8.0212e-151.6213e-19 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-local-adpstyle1.a2m 5.3475e-172.1257e-19
1s72T/YGR034W-1s72T-local-adpstyle5.a2m 5.3475e-172.1257e-19
1jj2S/1jj2S-YGR034W-local-adpstyle5.a2m 1.0955e-162.1283e-19 1ffkQ b.34.5.1
1jj2S/1jj2S-YGR034W-local-adpstyle1.a2m 1.0955e-162.1283e-19 1ffkQ b.34.5.1
1s72T/1s72T-YGR034W-local-adpstyle1.a2m 5.3475e-172.4585e-19
1s72T/1s72T-YGR034W-local-adpstyle5.a2m 5.3475e-172.4585e-19
1ffkQ/YGR034W-1ffkQ-global-str-1.5-adpstyle5.a2m 8.0212e-152.8576e-19 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-local-adpstyle1.a2m 1.0955e-163.9616e-19 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-local-adpstyle5.a2m 1.0955e-163.9616e-19 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-alpha-0.3-adpstyle5.a2m 8.0212e-154.0705e-19 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-str-1.5-adpstyle5.a2m 8.0212e-151.5224e-18 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-str2-0.3-adpstyle5.a2m 8.0212e-151.6092e-18 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-adpstyle1.a2m 8.0212e-152.0686e-18 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-global-adpstyle5.a2m 8.0212e-152.0686e-18 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-str-0.3-adpstyle5.a2m 8.0212e-152.4207e-18 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-stride-ebghtl-0.3-adpstyle5.a2m 8.0212e-152.4441e-18 1ffkQ b.34.5.1
1ffkQ/1ffkQ-YGR034W-global-adpstyle1.a2m 8.0212e-152.5274e-18 1ffkQ b.34.5.1
1ffkQ/1ffkQ-YGR034W-global-adpstyle5.a2m 8.0212e-152.5274e-18 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-dssp-ebghstl-0.3-adpstyle5.a2m 8.0212e-153.2697e-18 1ffkQ b.34.5.1
1s1iU/YGR034W-1s1iU-global-adpstyle5.a2m 1.8541e-123.5906e-18
1s1iU/YGR034W-1s1iU-global-adpstyle1.a2m 1.8541e-123.5906e-18
1ffkQ/1ffkQ-YGR034W-local-adpstyle5.a2m 8.0212e-151.0676e-17 1ffkQ b.34.5.1
1ffkQ/1ffkQ-YGR034W-local-adpstyle1.a2m 8.0212e-151.0676e-17 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-adpstyle1.a2m 8.0212e-151.4182e-17 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-local-adpstyle5.a2m 8.0212e-151.4182e-17 1ffkQ b.34.5.1
1s1iU/YGR034W-1s1iU-local-adpstyle1.a2m 1.8541e-127.6970e-17
1s1iU/YGR034W-1s1iU-local-adpstyle5.a2m 1.8541e-127.6970e-17
1jj2S/1ffkQ-YGR034W-fssp-global-adpstyle5.a2m 1.0955e-161.0061e-16 1ffkQ b.34.5.1
1jj2S/1ffkQ-YGR034W-fssp-local-adpstyle5.a2m 1.0955e-162.3228e-16 1ffkQ b.34.5.1
1s72T/YGR034W-1s72T-simplesw-adpstyle5.a2m 5.3475e-172.6719e-16
1s72T/YGR034W-1s72T-simplesw-adpstyle1.a2m 5.3475e-172.6719e-16
1jj2S/YGR034W-1jj2S-simplesw-adpstyle1.a2m 1.0955e-164.7457e-16 1ffkQ b.34.5.1
1jj2S/YGR034W-1jj2S-simplesw-adpstyle5.a2m 1.0955e-164.7457e-16 1ffkQ b.34.5.1
1ffkQ/1ffkQ-YGR034W-fssp-global-adpstyle5.a2m 8.0212e-153.6017e-15 1ffkQ b.34.5.1
1ffkQ/1ffkQ-YGR034W-fssp-local-adpstyle5.a2m 8.0212e-158.3150e-15 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-simplesw-adpstyle1.a2m 8.0212e-151.6989e-14 1ffkQ b.34.5.1
1ffkQ/YGR034W-1ffkQ-simplesw-adpstyle5.a2m 8.0212e-151.6989e-14 1ffkQ b.34.5.1
1p85S/YGR034W-1p85S-global-adpstyle1.a2m 1.9170e-077.3399e-10 i.1.1.1
1p85S/YGR034W-1p85S-global-adpstyle5.a2m 1.9170e-077.3399e-10 i.1.1.1
1nkwS/YGR034W-1nkwS-global-adpstyle1.a2m 3.3563e-078.7723e-10 i.1.1.2
1nkwS/YGR034W-1nkwS-global-adpstyle5.a2m 3.3563e-078.7723e-10 i.1.1.2
1pnuS/YGR034W-1pnuS-global-adpstyle5.a2m 3.4097e-071.1045e-09 i.1.1.1
1pnuS/YGR034W-1pnuS-global-adpstyle1.a2m 3.4097e-071.1045e-09 i.1.1.1
1p85S/YGR034W-1p85S-local-adpstyle1.a2m 1.9170e-071.2364e-09 i.1.1.1
1p85S/YGR034W-1p85S-local-adpstyle5.a2m 1.9170e-071.2364e-09 i.1.1.1
1nkwS/YGR034W-1nkwS-local-adpstyle5.a2m 3.3563e-072.6851e-09 i.1.1.2
1nkwS/YGR034W-1nkwS-local-adpstyle1.a2m 3.3563e-072.6851e-09 i.1.1.2
1pnuS/YGR034W-1pnuS-local-adpstyle5.a2m 3.4097e-072.7434e-09 i.1.1.1
1pnuS/YGR034W-1pnuS-local-adpstyle1.a2m 3.4097e-072.7434e-09 i.1.1.1
1p85S/YGR034W-1p85S-simplesw-adpstyle1.a2m 1.9170e-079.5114e-07 i.1.1.1
1p85S/YGR034W-1p85S-simplesw-adpstyle5.a2m 1.9170e-079.5114e-07 i.1.1.1
1nkwS/YGR034W-1nkwS-simplesw-adpstyle5.a2m 3.3563e-074.4112e-06 i.1.1.2
1nkwS/YGR034W-1nkwS-simplesw-adpstyle1.a2m 3.3563e-074.4112e-06 i.1.1.2
1pnuS/YGR034W-1pnuS-simplesw-adpstyle1.a2m 3.4097e-074.4782e-06 i.1.1.1
1pnuS/YGR034W-1pnuS-simplesw-adpstyle5.a2m 3.4097e-074.4782e-06 i.1.1.1
1nz9A/YGR034W-1nz9A-global-adpstyle1.a2m 9.8223e-021.3209e-02
1nz9A/YGR034W-1nz9A-global-adpstyle5.a2m 9.8223e-021.3209e-02
1nz9A/YGR034W-1nz9A-local-adpstyle5.a2m 9.8223e-023.9153e-02
1nz9A/YGR034W-1nz9A-local-adpstyle1.a2m 9.8223e-023.9153e-02
1nz9A/YGR034W-1nz9A-simplesw-adpstyle1.a2m 9.8223e-023.8814e-01
1nz9A/YGR034W-1nz9A-simplesw-adpstyle5.a2m 9.8223e-023.8814e-01
1uezA/YGR034W-1uezA-local-adpstyle1.a2m 7.5890e+006.7113e+00
1uezA/YGR034W-1uezA-local-adpstyle5.a2m 7.5890e+006.7113e+00
1sxjA/YGR034W-1sxjA-local-adpstyle5.a2m 8.7065e+007.8423e+00
1sxjA/YGR034W-1sxjA-local-adpstyle1.a2m 8.7065e+007.8423e+00
1uezA/YGR034W-1uezA-global-adpstyle1.a2m 7.5890e+002.2446e+01
1uezA/YGR034W-1uezA-global-adpstyle5.a2m 7.5890e+002.2446e+01
1uezA/YGR034W-1uezA-simplesw-adpstyle5.a2m 7.5890e+002.3941e+01
1uezA/YGR034W-1uezA-simplesw-adpstyle1.a2m 7.5890e+002.3941e+01
1sxjA/YGR034W-1sxjA-simplesw-adpstyle5.a2m 8.7065e+002.6025e+01
1sxjA/YGR034W-1sxjA-simplesw-adpstyle1.a2m 8.7065e+002.6025e+01
1sxjA/YGR034W-1sxjA-global-adpstyle1.a2m 8.7065e+002.7746e+01
1sxjA/YGR034W-1sxjA-global-adpstyle5.a2m 8.7065e+002.7746e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001