# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s72T 120 3.61e-16 1jj2S 119 4.33e-16 1ffkQ b.34.5.1 63104 1ffkQ 119 2.22e-15 1ffkQ b.34.5.1 24605 1ilr1 152 1.99e+00 1irp 1irp 153 2.26e+00 1irp b.42.1.2 25559 1iraX 152 2.47e+00 1irp b.42.1.2 25556 1bmfA 510 3.76e+00 1skyB a.69.1.1 18281 b.49.1.1 26446 c.37.1.11 32326 1m2tA 254 3.89e+00 d.165.1.1 84761 2dynA 122 4.11e+00 1dynA b.55.1.1 26957 1az9 457 4.72e+00 1az9 c.55.2.1 33547 d.127.1.1 41164 1a16 440 4.81e+00 1az9 c.55.2.1 33548 d.127.1.1 41165 1mxgA 435 5.61e+00 b.71.1.1 85193 c.1.8.1 85194 1e32A 458 5.64e+00 1e32A b.52.2.3 59183 c.37.1.20 59184 d.31.1.1 59185 1qa7A 217 5.77e+00 1havA b.47.1.4 26425 1qmyA 167 6.15e+00 1qmyA d.3.1.2 37094 1nhp 447 6.64e+00 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1joa 447 6.77e+00 1nhp c.3.1.5 30563 c.3.1.5 30564 d.87.1.1 40203 1nhs 447 6.78e+00 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1e79A 510 7.96e+00 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1hlcA 129 9.16e+00 1c1lA b.29.1.3 24208 1h8eA 510 1.06e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1dynA 125 1.10e+01 1dynA b.55.1.1 26955 1bbzE 58 1.16e+01 1bbzA b.34.2.1 24479 1qa7B 217 1.17e+01 1havA b.47.1.4 26426 1bbzA 58 1.18e+01 1bbzA b.34.2.1 24477 1aboA 62 1.22e+01 1bbzA b.34.2.1 24474 1njhA 119 1.23e+01 b.128.1.1 85787 1i3zA 103 1.40e+01 d.93.1.1 83667 1x8mA 288 1.42e+01 1ksiA 642 1.58e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1qhoA 686 1.61e+01 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1czfA 362 1.63e+01 1czfA b.80.1.3 28031 1rl6A 177 1.76e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1ejfA 125 1.89e+01 1ejfA b.15.1.2 23683 1dkxA 219 1.94e+01 1dkzA e.20.1.1 43315 1aipE 405 2.04e+01 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1u69A 163 2.04e+01 1exmA 405 2.11e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1hf2A 210 2.14e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1trb 320 2.16e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1ksiB 642 2.33e+01 1ksiB b.30.2.1 24409 d.17.2.1 38045 d.17.2.1 38046 1ha3A 405 2.34e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1dkzA 219 2.38e+01 1dkzA e.20.1.1 43314 1g86A 142 2.55e+01 b.29.1.3 70161 1lcl 142 2.55e+01 1lcl b.29.1.3 24216 1jhfA 202 2.58e+01 a.4.5.2 63057 b.87.1.1 63058 1l3aA 228 2.60e+01 d.18.1.2 73531 1erv 105 2.70e+01 1erv c.47.1.1 32743 1jdqA 98 2.72e+01 d.68.3.3 66559 1i7oA 429 2.74e+01 1i7oA d.177.1.1 61893 d.177.1.1 61894 1axiB 236 2.74e+01 1axiB b.1.2.1 21997 b.1.2.1 21998 1bxvA 91 2.75e+01 1aac b.6.1.1 22875 1gttA 429 2.82e+01 d.177.1.1 70529 d.177.1.1 70530 1nykA 165 2.84e+01 b.33.1.1 86408 1mrj 247 2.97e+01 1mrj d.165.1.1 42177 1fzoA 274 3.02e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1hdkA 141 3.02e+01 b.29.1.3 65807 1g7pA 274 3.04e+01 b.1.1.2 70153 d.19.1.1 70154 1lk2A 274 3.04e+01 1fzkA 274 3.08e+01 1agdA b.1.1.2 60149 d.19.1.1 60150 1erw 105 3.10e+01 1erv c.47.1.1 32745 1h2kA 349 3.11e+01 b.82.2.6 76572 1mzeA 351 3.18e+01 b.82.2.6 79694 2dpmA 284 3.19e+01 2dpmA c.66.1.28 34246 1vie 62 3.25e+01 1vie b.34.4.1 24592 1vif 62 3.25e+01 1vie b.34.4.1 24593 1iwmA 186 3.29e+01 b.125.1.2 83758 1tuaA 191 3.32e+01 1qqjA 419 3.34e+01 1qcnA b.34.8.1 59034 d.177.1.1 59035 1ieaA 192 3.37e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1fl2A 310 3.57e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870 1bpr 191 3.60e+01 1dkzA e.20.1.1 43319 1fhoA 119 3.62e+01 1fhoA b.55.1.1 26982 1s5lO 246 3.64e+01 1o75A 415 3.66e+01 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1tueB 218 3.67e+01 1qcnA 421 3.68e+01 1qcnA b.34.8.1 59017 d.177.1.1 59018 1ut1A 148 3.73e+01 1hyoA 421 3.76e+01 1qcnA b.34.8.1 59001 d.177.1.1 59002 1kawA 135 3.78e+01 3ullA b.40.4.3 25288 1pkn 530 3.82e+01 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1tbgA 340 3.85e+01 1tbgA b.69.4.1 27649 1bjt 793 3.87e+01 1bjt e.11.1.1 43249 1kpuA 274 3.87e+01 b.1.1.2 84456 d.19.1.1 84457