# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s72T 120 1.01e-16 1jj2S 119 1.23e-16 1ffkQ b.34.5.1 63104 1ffkQ 119 2.03e-16 1ffkQ b.34.5.1 24605 1ri9A 102 3.05e+00 1hjdA 101 3.52e+00 b.34.2.1 65846 1jj2X 240 3.99e+00 1ffkV c.9.2.1 63109 1s72Y 241 4.31e+00 1s72S 85 4.35e+00 1jj2R 84 4.89e+00 1ffkP d.12.1.1 63103 1uunA 184 4.91e+00 1ffkP 84 6.00e+00 1ffkP d.12.1.1 37493 1tjlA 151 6.06e+00 1irp 153 6.15e+00 1irp b.42.1.2 25559 1ffkV 143 7.74e+00 1ffkV c.9.2.1 30849 1ibyA 112 7.97e+00 1ibzA b.6.1.4 62233 1ibzA 112 8.91e+00 1ibzA b.6.1.4 62237 1g0sA 209 9.13e+00 1g0sA d.113.1.1 60187 2itg 163 9.26e+00 1b9dA c.55.3.2 33669 1g5rA 196 9.65e+00 1g5rA c.37.1.11 32367 2dynA 122 9.73e+00 1dynA b.55.1.1 26957 1g19A 350 1.08e+01 2reb c.37.1.11 32284 d.48.1.1 38770 1i3jA 116 1.22e+01 1i3jA e.30.1.1 61594 1b8zA 90 1.39e+01 1huuA a.55.1.1 17902 1iraX 152 1.40e+01 1irp b.42.1.2 25556 1g5tA 196 1.52e+01 1g5rA c.37.1.11 32366 1bwzA 274 1.62e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 1dynA 125 1.63e+01 1dynA b.55.1.1 26955 1idiA 74 1.70e+01 1idiA g.7.1.1 62298 1tfe 145 1.72e+01 1tfe d.43.1.1 38680 1d7qA 143 1.93e+01 1d7qA b.40.4.5 25331 1e1oA 504 2.08e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1whsB 153 2.12e+01 1whtB 1lnqA 336 2.15e+01 c.2.1.9 74049 f.14.1.1 74050 1whtB 153 2.17e+01 1whtB 1k8kG 151 2.19e+01 a.118.13.1 68313 1bcsB 160 2.23e+01 1whtB 1ubeA 349 2.29e+01 c.37.1.11 88412 d.48.1.1 88413 2cuaA 135 2.30e+01 2cuaA b.6.1.2 23039 1ilr1 152 2.35e+01 1irp 2if1 126 2.50e+01 2if1 d.64.1.1 39547 1ugpB 226 2.61e+01 1hl6A 165 2.63e+01 d.58.7.1 83609 1fhuA 320 2.67e+01 1fhuA c.1.11.2 29234 d.54.1.1 38878 1awo 62 2.73e+01 1bbzA b.34.2.1 24482 1t6aA 126 2.73e+01 1ov3A 138 2.78e+01 b.34.2.1 87451 b.34.2.1 87452 1ireB 228 2.78e+01 b.34.4.4 76770 1dzfA 215 2.89e+01 1dzfA c.52.3.1 33344 d.78.1.1 39753 1gqzA 274 2.93e+01 d.21.1.1 83311 d.21.1.1 83312 1b8aA 438 3.23e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1lylA 504 3.26e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1no1A 126 3.26e+01 a.179.1.1 85913 2wrpR 107 3.35e+01 1jhgA a.4.12.1 19010 1bqv 110 3.36e+01 1bqv a.60.1.1 17932 1a2xB 47 3.38e+01 1a2xB j.22.1.1 46179 1s72Q 96 3.43e+01 1qhxA 178 3.57e+01 1qhsA c.37.1.3 31936 1qqp3 220 3.60e+01 1qqp3 4rhv1 289 3.78e+01 1pov1 1faaA 124 3.79e+01 1erv c.47.1.1 32738 1qexA 288 3.94e+01 1qexA b.32.1.1 24425 1auiA 521 3.94e+01 1auiA d.159.1.3 42085 1bbt3 220 3.94e+01 1qqp3