# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qbkB 890 4.35e-01 1qbkB a.118.1.1 19127 1jb0A 755 8.23e-01 1jb0A f.29.1.1 62820 1cjaA 342 1.58e+00 1cjaA d.144.1.3 41708 1ah7 245 1.77e+00 1ah7 a.124.1.1 19339 1h2vC 771 2.50e+00 a.118.1.2 76592 a.118.1.2 76593 a.118.1.2 76594 1jipA 403 2.78e+00 a.104.1.1 66748 1j0mA 752 3.08e+00 a.102.3.2 83910 b.24.1.1 83911 b.30.5.2 83912 1iapA 211 3.19e+00 a.91.1.1 62119 1eupA 403 4.03e+00 1rom a.104.1.1 18967 1so2A 420 4.27e+00 1ovlA 271 5.36e+00 a.123.1.1 87455 1jcqA 382 6.04e+00 a.118.6.1 66504 1xis 387 6.54e+00 4xis c.1.15.3 29422 2xis 387 6.61e+00 4xis c.1.15.3 29427 1h6kA 757 6.82e+00 a.118.1.2 60675 a.118.1.2 60676 a.118.1.2 60677 3xis 387 6.84e+00 4xis c.1.15.3 29423 1eguA 731 6.99e+00 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1keyA 235 7.76e+00 a.118.16.1 72389 1lxkA 721 7.88e+00 a.102.3.2 74331 b.24.1.1 74332 b.30.5.2 74333 1gw9A 388 7.98e+00 c.1.15.3 70658 1mnzA 388 8.34e+00 c.1.15.3 79328 4xis 387 8.49e+00 4xis c.1.15.3 29421 1e8yA 966 8.55e+00 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1ld8A 382 8.69e+00 a.118.6.1 73838 1tn6A 382 9.52e+00 1oxa 403 9.62e+00 1f4tA a.104.1.1 18965 1ca1 370 1.01e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1pv6A 417 1.02e+01 1dquA 538 1.03e+01 1dquA c.1.12.7 29314 2bidA 197 1.09e+01 2bidA f.1.4.1 43398 2pflA 759 1.19e+01 1cm5A c.7.1.1 30675 1mhyB 395 1.32e+01 1mtyB a.25.1.2 16781 1tbfA 347 1.34e+01 1mhyG 169 1.34e+01 1mtyG a.23.3.1 16518 1pu6A 218 1.45e+01 1vljA 407 1.51e+01 1a8b 318 1.56e+01 1avc a.65.1.1 18171 1ft1A 377 1.57e+01 1ft1A a.118.6.1 19186 2pgd 482 1.60e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1itcA 516 1.64e+01 b.3.1.1 83705 c.1.8.1 83706 1r8iA 213 1.68e+01 1gcvA 140 1.69e+01 1cg5B a.1.1.2 15410 1u19A 349 1.73e+01 2ran 316 1.76e+01 1avc a.65.1.1 18170 1b77A 228 1.92e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1t7pA 698 1.93e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1qjbA 245 1.95e+01 1qjaA a.118.7.1 19202 1hzxA 349 1.97e+01 1f88A f.13.1.2 61466 1ppjC 379 1.98e+01 1ezfA 340 2.01e+01 1ezfA a.128.1.2 19440 1ak0 270 2.05e+01 1ak0 a.124.1.2 19345 1fkmA 396 2.06e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1dnpA 471 2.18e+01 1qnf a.99.1.1 18775 c.28.1.1 31630 1qjaA 245 2.19e+01 1qjaA a.118.7.1 19204 1rmi 160 2.20e+01 1ifa a.26.1.3 16891 1a8a 318 2.23e+01 1avc a.65.1.1 18169 1n7oA 721 2.27e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1d8dA 377 2.30e+01 1ft1A a.118.6.1 19185 1gw5B 591 2.36e+01 a.118.1.10 70630 1pzlA 237 2.43e+01 1j1jA 240 2.49e+01 1br2A 791 2.55e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 1clqA 903 2.58e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 1jsqA 582 2.64e+01 i.13.1.1 63270 1b9zA 516 2.65e+01 1b9zA b.3.1.1 22528 c.1.8.1 28798 1f8mA 429 2.68e+01 1dquA c.1.12.7 29315 1mtyG 162 2.69e+01 1mtyG a.23.3.1 16498 1be3C 379 2.72e+01 1be3C f.32.1.1 75805 f.21.1.2 75806 1h16A 759 2.99e+01 c.7.1.1 76462 1oaoA 674 3.03e+01 e.26.1.2 86744 1jcrA 377 3.08e+01 a.118.6.1 66506 1ujnA 348 3.13e+01 3pflA 759 3.21e+01 1cm5A c.7.1.1 30673 1f4tA 368 3.22e+01 1f4tA a.104.1.1 18973 1a76 326 3.47e+01 1a76 a.60.7.1 18091 c.120.1.2 33361 1wmdA 434 3.54e+01 1f88A 348 3.57e+01 1f88A f.13.1.2 43429 1ls6A 295 3.59e+01 1fhjB 146 3.68e+01 1abwA a.1.1.2 59838 1e8xA 961 3.69e+01 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1ih7A 903 3.73e+01 1clqA c.55.3.5 62375 e.8.1.1 62376 5bcaA 516 3.75e+01 1b9zA b.3.1.1 22529 c.1.8.1 28799 1qbqA 333 3.77e+01 1ft1A a.118.6.1 19187 1nvmA 345 3.83e+01 a.5.7.1 86249 c.1.10.5 86250 1mmoG 162 3.85e+01 1mtyG a.23.3.1 16512 1lrv 244 3.99e+01 1lrv a.118.1.5 19146