# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qvjA 292 2.34e+00 1ovnA 248 2.55e+00 1ehkA 562 2.65e+00 1ehkA f.24.1.1 43624 1jmoA 480 2.85e+00 e.1.1.1 77138 1q33A 292 3.02e+00 1gln 468 3.54e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1kmmA 424 4.13e+00 1adjA c.51.1.1 33174 d.104.1.1 40723 2thiA 379 4.97e+00 2thiA c.94.1.1 35794 1gm5A 780 5.02e+00 a.29.4.1 65298 b.40.4.9 65299 c.37.1.19 65300 c.37.1.19 65301 1g59A 468 5.98e+00 a.97.1.1 60257 c.26.1.1 60258 1j09A 468 6.10e+00 a.97.1.1 77025 c.26.1.1 77026 1rh5B 74 7.37e+00 3thiA 371 8.32e+00 2thiA c.94.1.1 35792 1jcqA 382 9.11e+00 a.118.6.1 66504 1gt8A 1025 9.34e+00 a.1.2.2 70418 c.1.4.1 70419 c.3.1.1 70420 c.4.1.1 70421 d.58.1.5 70422 1gthD 1025 9.50e+00 a.1.2.2 70498 c.1.4.1 70499 c.3.1.1 70500 c.4.1.1 70501 d.58.1.5 70502 1m1jA 491 9.69e+00 h.1.8.1 74369 1gthB 1025 9.76e+00 a.1.2.2 70488 c.1.4.1 70489 c.3.1.1 70490 c.4.1.1 70491 d.58.1.5 70492 1h7wA 1025 1.01e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1h7wB 1025 1.03e+01 a.1.2.2 15684 c.1.4.1 28629 c.3.1.1 30325 c.4.1.1 30610 d.58.1.5 39008 1fqiA 147 1.04e+01 1agrE a.91.1.1 18542 1gt8B 1025 1.05e+01 a.1.2.2 70423 c.1.4.1 70424 c.3.1.1 70425 c.4.1.1 70426 d.58.1.5 70427 1gthA 1025 1.06e+01 a.1.2.2 70483 c.1.4.1 70484 c.3.1.1 70485 c.4.1.1 70486 d.58.1.5 70487 1h7wD 1025 1.06e+01 a.1.2.2 15686 c.1.4.1 28631 c.3.1.1 30327 c.4.1.1 30612 d.58.1.5 39010 1gteA 1025 1.11e+01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1gthC 1025 1.13e+01 a.1.2.2 70493 c.1.4.1 70494 c.3.1.1 70495 c.4.1.1 70496 d.58.1.5 70497 1gt8D 1025 1.14e+01 a.1.2.2 70433 c.1.4.1 70434 c.3.1.1 70435 c.4.1.1 70436 d.58.1.5 70437 1h7xC 1025 1.21e+01 a.1.2.2 15689 c.1.4.1 28634 c.3.1.1 30330 c.4.1.1 30615 d.58.1.5 39013 1tn6A 382 1.21e+01 1h7xA 1025 1.23e+01 1h7wA a.1.2.2 15687 c.1.4.1 28632 c.3.1.1 30328 c.4.1.1 30613 d.58.1.5 39011 1dlc 584 1.25e+01 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1ld8A 382 1.25e+01 a.118.6.1 73838 1httA 423 1.27e+01 1adjA c.51.1.1 33178 d.104.1.1 40727 1h7xD 1025 1.27e+01 a.1.2.2 15690 c.1.4.1 28635 c.3.1.1 30331 c.4.1.1 30616 d.58.1.5 39014 1gteD 1025 1.32e+01 a.1.2.2 70455 c.1.4.1 70456 c.3.1.1 70457 c.4.1.1 70458 d.58.1.5 70459 1ap8 213 1.34e+01 1ap8 d.86.1.1 40151 1ft1A 377 1.34e+01 1ft1A a.118.6.1 19186 1kmnD 424 1.35e+01 1adjA c.51.1.1 33185 d.104.1.1 40734 1h7xB 1025 1.49e+01 a.1.2.2 15688 c.1.4.1 28633 c.3.1.1 30329 c.4.1.1 30614 d.58.1.5 39012 1mnmA 100 1.55e+01 1mnmA d.88.1.1 40232 1gt8C 1025 1.61e+01 a.1.2.2 70428 c.1.4.1 70429 c.3.1.1 70430 c.4.1.1 70431 d.58.1.5 70432 7reqB 637 1.85e+01 1reqB c.1.19.1 29617 c.23.6.1 31244 1qbqA 333 2.17e+01 1ft1A a.118.6.1 19187 1jcrA 377 2.40e+01 a.118.6.1 66506 1qhdA 398 2.46e+01 1qhdA a.115.1.2 63324 b.19.1.1 63325 1ux5A 411 2.73e+01 1ichA 112 2.75e+01 a.77.1.2 71182 1d8dA 377 2.82e+01 1ft1A a.118.6.1 19185 1l9hA 349 2.84e+01 f.13.1.2 73720 1gjwA 637 3.12e+01 b.71.1.1 60582 c.1.8.1 60583 1a76 326 3.34e+01 1a76 a.60.7.1 18091 c.120.1.2 33361 1fz1C 389 3.36e+01 1mtyB a.25.1.2 16746 1mg7A 417 3.52e+01 d.14.1.6 84954 d.58.26.6 84955 1f88A 348 3.56e+01 1f88A f.13.1.2 43429 1clqA 903 3.75e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 1hzxA 349 3.81e+01 1f88A f.13.1.2 61466 1ez0A 510 3.92e+01 1eyyA c.82.1.1 35385