YGR030C (POP6) SGDID:S0003262, Chr VII from 545675-546151, reverse complement
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | YGR030C.a2m | 2002 Nov 8 18:14:00 |
| SAM_T02 multiple alignment in a2m format | YGR030C.t2k.a2m.gz | 2002 Nov 8 18:25:26 |
| SAM_T02 multiple alignment in pretty html format | YGR030C.t2k.pa.html | 2002 Nov 8 18:25:27 |
| SAM_T02 target hidden Markov model | YGR030C.t2k-w0.5.mod | 2002 Nov 8 18:25:28 |
| SAM_T02 multiple alignment in sequence logo format | YGR030C.t2k.w0.5-logo.eps | 2002 Nov 8 18:25:29 |
| Secondary Structure Prediction |
| Str structure prediction RDB format | YGR030C.t2k.str.rdb | 2002 Nov 8 18:25:30 |
| Str structure prediction sequence format | YGR030C.t2k.str.seq | 2002 Nov 8 18:25:29 |
| Str structure prediction in sequence logo format | YGR030C.t2k.str-logo.eps | 2002 Nov 8 18:25:30 |
| DSSP EBGHSTL structure prediction RDB format | YGR030C.t2k.dssp-ebghstl.rdb | 2002 Nov 8 18:25:29 |
| DSSP EBGHSTL structure prediction in sequence logo format | YGR030C.t2k.dssp-ebghstl-logo.eps | 2002 Nov 8 18:25:31 |
| Stride EBGHTL structure prediction RDB format | YGR030C.t2k.stride-ebghtl.rdb | 2002 Nov 8 18:25:31 |
| Stride EBGHTL structure prediction sequence format | YGR030C.t2k.stride-ebghtl.seq | 2002 Nov 8 18:25:31 |
| Stride EBGHTL structure prediction in sequence logo format | YGR030C.t2k.stride-ebghtl-logo.eps | 2002 Nov 8 18:25:32 |
| Alpha angle prediction RDB format | YGR030C.t2k.alpha.rdb | 2002 Nov 8 18:25:32 |
| Alpha angle prediction sequence format | YGR030C.t2k.alpha.seq | 2002 Nov 8 18:25:32 |
| Alpha angle prediction in sequence logo format | YGR030C.t2k.alpha-logo.eps | 2002 Nov 8 18:25:33 |
| DSSP 3-value prediction RDB format | YGR030C.t2k.dssp-ehl2.rdb | 2002 Nov 8 18:25:33 |
| DSSP-EHL2 structure prediction CASP format | YGR030C.t2k.dssp-ehl2 | 2002 Nov 8 18:25:33 |
| DSSP 3-value prediction in sequence logo format | YGR030C.t2k.dssp-ehl2-logo.eps | 2002 Nov 8 18:25:33 |
| Target model scores |
| Annotated amino acid single-track target model scores of PDB | YGR030C.t2k-w0.5-scores.html | 2002 Nov 8 18:29:40 |
| Annotated amino acid/100-30-str two-track target model scores | YGR030C.t2k-100-30-str-scores.html | 2002 Nov 8 18:33:17 |
| Annotated amino acid/100-30-dssp-ebghstl two-track target model scores | YGR030C.t2k-100-30-dssp-ebghstl-scores.html | 2002 Nov 8 18:36:54 |
| Annotated amino acid/100-30-stride-ebghtl two-track target model scores | YGR030C.t2k-100-30-stride-ebghtl-scores.html | 2002 Nov 8 18:40:31 |
| Annotated amino acid/100-30-alpha two-track target model scores | YGR030C.t2k-100-30-alpha-scores.html | 2002 Nov 8 18:44:07 |
| Annotated amino acid/100-30-dssp-ehl2 two-track target model scores | YGR030C.t2k-100-30-dssp-ehl2-scores.html | 2002 Nov 8 18:47:44 |
| Template model scores |
| Annotated template model scores | YGR030C.template-lib-scores.html | 2002 Nov 8 18:52:39 |
| Top Hits |
| Best scoring hits from all models | YGR030C.t2k.best-scores.html | 2002 Nov 8 18:52:40 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | YGR030C.t2k.many_alignments.html | 2002 Nov 8 18:53:20 |
| T02 Top Models Summary | YGR030C.t2k.top_reported_alignments.html | 2002 Dec 29 12:06:34 |
| Undertaker (3d) files |
| Script for dssp coloring in rasmol | YGR030C.t2k.dssp-color.rasmol | 2002 Nov 8 18:25:31 |
| Script for stride coloring in rasmol | YGR030C.t2k.stride-color.rasmol | 2002 Nov 8 18:25:31 |
| Script for str coloring in rasmol | YGR030C.t2k.str-color.rasmol | 2002 Nov 8 18:25:30 |
| Script for alpha coloring in rasmol | YGR030C.t2k.alpha-color.rasmol | 2002 Nov 8 18:25:32 |
| Multiple alignment for undertaker templates | YGR030C.t2k-2track-undertaker.a2m | 2002 Dec 29 12:08:27 |
| Undertaker input for top alignments | YGR030C.t2k.undertaker-align.under | 2002 Dec 29 12:08:27 |
| PDB file with models for top alignments | YGR030C.t2k.undertaker-align.pdb.gz | 2002 Dec 29 12:09:08 |
| Fragment list for undertaker (from fragfinder) | YGR030C.t2k.frag.gz | 2002 Nov 8 18:59:27 |
Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus rachelk@soe.ucsc.edu karplus@soe.ucsc.edu