Best Alignments for YGR030C

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1mldA/YGR030C-1mldA-global-str-1.5-adpstyle5.a2m 8.6588e+003.7973e-01 2cmd d.162.1.1
c.2.1.5
1preA/1preA-YGR030C-fssp-global-adpstyle5.a2m 2.1052e+011.1580e+00 1preA f.8.1.1
d.169.1.2
1mldA/YGR030C-1mldA-global-stride-ebghtl-0.3-adpstyle5.a2m 8.6588e+001.5876e+00 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-global-dssp-ebghstl-0.3-adpstyle5.a2m 8.6588e+001.6226e+00 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-global-str-0.3-adpstyle5.a2m 8.6588e+001.8579e+00 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-local-str-1.5-adpstyle5.a2m 8.6588e+001.9858e+00 2cmd d.162.1.1
c.2.1.5
1h0xA/YGR030C-1h0xA-global-alpha-0.3-adpstyle5.a2m 9.2544e+002.7104e+00
1mldA/2cmd-YGR030C-fssp-global-adpstyle5.a2m 8.6588e+002.8139e+00 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-global-alpha-0.3-adpstyle5.a2m 8.6588e+002.8952e+00 2cmd d.162.1.1
c.2.1.5
1mldA/2cmd-YGR030C-fssp-local-adpstyle5.a2m 8.6588e+003.3621e+00 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-local-dssp-ebghstl-0.3-adpstyle5.a2m 8.6588e+003.6338e+00 2cmd d.162.1.1
c.2.1.5
1preA/1preA-YGR030C-fssp-local-adpstyle5.a2m 2.1052e+013.6363e+00 1preA f.8.1.1
d.169.1.2
1h0xA/YGR030C-1h0xA-global-str-1.5-adpstyle5.a2m 9.2544e+003.7146e+00
1mldA/YGR030C-1mldA-local-str-0.3-adpstyle5.a2m 8.6588e+003.8014e+00 2cmd d.162.1.1
c.2.1.5
1h0xA/1h0xA-YGR030C-global-adpstyle1.a2m 9.2544e+003.8286e+00
1h0xA/1h0xA-YGR030C-global-adpstyle5.a2m 9.2544e+003.8286e+00
1mldA/YGR030C-1mldA-local-stride-ebghtl-0.3-adpstyle5.a2m 8.6588e+003.9152e+00 2cmd d.162.1.1
c.2.1.5
1h0xA/YGR030C-1h0xA-global-dssp-ebghstl-0.3-adpstyle5.a2m 9.2544e+003.9783e+00
1h0xA/YGR030C-1h0xA-global-str-0.3-adpstyle5.a2m 9.2544e+004.3256e+00
1gm1A/YGR030C-1gm1A-global-adpstyle5.a2m 9.2485e+004.5198e+00
1gm1A/YGR030C-1gm1A-global-adpstyle1.a2m 9.2485e+004.5198e+00
1preA/YGR030C-1preA-global-str-1.5-adpstyle5.a2m 2.1052e+014.7979e+00 1preA f.8.1.1
d.169.1.2
1e7pA/1qlaA-YGR030C-fssp-local-adpstyle5.a2m 1.8558e+015.0387e+00 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/1qlaA-YGR030C-fssp-local-adpstyle5.a2m 1.8558e+015.0387e+00 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pA/1qlaA-YGR030C-fssp-global-adpstyle5.a2m 1.8558e+015.2622e+00 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/1qlaA-YGR030C-fssp-global-adpstyle5.a2m 1.8558e+015.2622e+00 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1h0xA/YGR030C-1h0xA-global-stride-ebghtl-0.3-adpstyle5.a2m 9.2544e+005.7420e+00
1h0xA/1h0xA-YGR030C-local-adpstyle1.a2m 9.2544e+006.5279e+00
1h0xA/1h0xA-YGR030C-local-adpstyle5.a2m 9.2544e+006.5279e+00
1mldA/YGR030C-1mldA-local-alpha-0.3-adpstyle5.a2m 8.6588e+006.5751e+00 2cmd d.162.1.1
c.2.1.5
1h0xA/YGR030C-1h0xA-local-alpha-0.3-adpstyle5.a2m 9.2544e+006.5931e+00
1h0xA/YGR030C-1h0xA-local-str-1.5-adpstyle5.a2m 9.2544e+007.0246e+00
1gm1A/YGR030C-1gm1A-simplesw-adpstyle1.a2m 9.2485e+008.5858e+00
1gm1A/YGR030C-1gm1A-simplesw-adpstyle5.a2m 9.2485e+008.5858e+00
1h0xA/YGR030C-1h0xA-global-adpstyle5.a2m 9.2544e+008.5879e+00
1h0xA/YGR030C-1h0xA-global-adpstyle1.a2m 9.2544e+008.5879e+00
1gm1A/YGR030C-1gm1A-local-adpstyle1.a2m 9.2485e+008.6264e+00
1gm1A/YGR030C-1gm1A-local-adpstyle5.a2m 9.2485e+008.6264e+00
1h0xA/YGR030C-1h0xA-local-str-0.3-adpstyle5.a2m 9.2544e+009.0154e+00
1preA/YGR030C-1preA-local-str-1.5-adpstyle5.a2m 2.1052e+019.2552e+00 1preA f.8.1.1
d.169.1.2
1h0xA/YGR030C-1h0xA-local-dssp-ebghstl-0.3-adpstyle5.a2m 9.2544e+009.7811e+00
1mldA/YGR030C-1mldA-global-adpstyle1.a2m 8.6588e+001.0827e+01 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-global-adpstyle5.a2m 8.6588e+001.0827e+01 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-local-adpstyle5.a2m 8.6588e+001.1065e+01 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-local-adpstyle1.a2m 8.6588e+001.1065e+01 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-simplesw-adpstyle5.a2m 8.6588e+001.1450e+01 2cmd d.162.1.1
c.2.1.5
1mldA/YGR030C-1mldA-simplesw-adpstyle1.a2m 8.6588e+001.1450e+01 2cmd d.162.1.1
c.2.1.5
1preA/YGR030C-1preA-local-dssp-ebghstl-0.3-adpstyle5.a2m 2.1052e+011.1938e+01 1preA f.8.1.1
d.169.1.2
1h0xA/YGR030C-1h0xA-local-stride-ebghtl-0.3-adpstyle5.a2m 9.2544e+001.2146e+01
1preA/YGR030C-1preA-local-str-0.3-adpstyle5.a2m 2.1052e+011.2646e+01 1preA f.8.1.1
d.169.1.2
1preA/YGR030C-1preA-local-stride-ebghtl-0.3-adpstyle5.a2m 2.1052e+011.5198e+01 1preA f.8.1.1
d.169.1.2
1d5gA/YGR030C-1d5gA-global-adpstyle1.a2m 1.7936e+011.5697e+01
1d5gA/YGR030C-1d5gA-global-adpstyle5.a2m 1.7936e+011.5697e+01
1e7pA/YGR030C-1e7pA-simplesw-adpstyle1.a2m 1.8558e+011.7727e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pA/YGR030C-1e7pA-simplesw-adpstyle5.a2m 1.8558e+011.7727e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/YGR030C-1e7pG-simplesw-adpstyle5.a2m 1.8558e+011.7727e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/YGR030C-1e7pG-simplesw-adpstyle1.a2m 1.8558e+011.7727e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1d5gA/YGR030C-1d5gA-local-adpstyle1.a2m 1.7936e+011.7963e+01
1d5gA/YGR030C-1d5gA-local-adpstyle5.a2m 1.7936e+011.7963e+01
1d5gA/YGR030C-1d5gA-simplesw-adpstyle1.a2m 1.7936e+011.8013e+01
1d5gA/YGR030C-1d5gA-simplesw-adpstyle5.a2m 1.7936e+011.8013e+01
1mldA/1mldA-YGR030C-global-adpstyle1.a2m 8.6588e+001.8073e+01 2cmd d.162.1.1
c.2.1.5
1mldA/1mldA-YGR030C-global-adpstyle5.a2m 8.6588e+001.8073e+01 2cmd d.162.1.1
c.2.1.5
1e7pA/YGR030C-1e7pA-local-adpstyle1.a2m 1.8558e+011.8647e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/YGR030C-1e7pG-local-adpstyle1.a2m 1.8558e+011.8647e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/YGR030C-1e7pG-local-adpstyle5.a2m 1.8558e+011.8647e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pA/YGR030C-1e7pA-local-adpstyle5.a2m 1.8558e+011.8647e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1h0xA/YGR030C-1h0xA-local-adpstyle1.a2m 9.2544e+001.9213e+01
1h0xA/YGR030C-1h0xA-local-adpstyle5.a2m 9.2544e+001.9213e+01
1h0xA/YGR030C-1h0xA-simplesw-adpstyle5.a2m 9.2544e+002.0008e+01
1h0xA/YGR030C-1h0xA-simplesw-adpstyle1.a2m 9.2544e+002.0008e+01
1rblA/YGR030C-1rblA-local-adpstyle1.a2m 2.1144e+012.1504e+01 1burA c.1.14.1
d.58.9.1
1rblA/YGR030C-1rblA-local-adpstyle5.a2m 2.1144e+012.1504e+01 1burA c.1.14.1
d.58.9.1
1rscA/YGR030C-1rscA-local-adpstyle5.a2m 2.1208e+012.1589e+01 1burA c.1.14.1
d.58.9.1
1rscA/YGR030C-1rscA-local-adpstyle1.a2m 2.1208e+012.1589e+01 1burA c.1.14.1
d.58.9.1
1preA/YGR030C-1preA-local-alpha-0.3-adpstyle5.a2m 2.1052e+012.1834e+01 1preA f.8.1.1
d.169.1.2
1preA/YGR030C-1preA-simplesw-adpstyle5.a2m 2.1052e+012.2574e+01 1preA f.8.1.1
d.169.1.2
1preA/YGR030C-1preA-simplesw-adpstyle1.a2m 2.1052e+012.2574e+01 1preA f.8.1.1
d.169.1.2
1rblA/YGR030C-1rblA-simplesw-adpstyle5.a2m 2.1144e+012.2644e+01 1burA c.1.14.1
d.58.9.1
1rblA/YGR030C-1rblA-simplesw-adpstyle1.a2m 2.1144e+012.2644e+01 1burA c.1.14.1
d.58.9.1
1e7pG/YGR030C-1e7pG-global-adpstyle5.a2m 1.8558e+012.2690e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pG/YGR030C-1e7pG-global-adpstyle1.a2m 1.8558e+012.2690e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1rscA/YGR030C-1rscA-simplesw-adpstyle1.a2m 2.1208e+012.2725e+01 1burA c.1.14.1
d.58.9.1
1rscA/YGR030C-1rscA-simplesw-adpstyle5.a2m 2.1208e+012.2725e+01 1burA c.1.14.1
d.58.9.1
1preA/YGR030C-1preA-local-adpstyle1.a2m 2.1052e+012.3300e+01 1preA f.8.1.1
d.169.1.2
1preA/YGR030C-1preA-local-adpstyle5.a2m 2.1052e+012.3300e+01 1preA f.8.1.1
d.169.1.2
1e7pA/YGR030C-1e7pA-global-adpstyle5.a2m 1.8558e+012.3390e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
1e7pA/YGR030C-1e7pA-global-adpstyle1.a2m 1.8558e+012.3390e+01 1qlaA a.7.3.1
d.168.1.1
c.3.1.4
3rubL/YGR030C-3rubL-local-adpstyle5.a2m 2.3335e+012.3968e+01 1burA c.1.14.1
d.58.9.1
3rubL/YGR030C-3rubL-local-adpstyle1.a2m 2.3335e+012.3968e+01 1burA c.1.14.1
d.58.9.1
1mldA/1mldA-YGR030C-local-adpstyle5.a2m 8.6588e+002.3973e+01 2cmd d.162.1.1
c.2.1.5
1mldA/1mldA-YGR030C-local-adpstyle1.a2m 8.6588e+002.3973e+01 2cmd d.162.1.1
c.2.1.5
3rubL/YGR030C-3rubL-simplesw-adpstyle5.a2m 2.3335e+012.5176e+01 1burA c.1.14.1
d.58.9.1
3rubL/YGR030C-3rubL-simplesw-adpstyle1.a2m 2.3335e+012.5176e+01 1burA c.1.14.1
d.58.9.1
1preA/YGR030C-1preA-global-dssp-ebghstl-0.3-adpstyle5.a2m 2.1052e+012.6648e+01 1preA f.8.1.1
d.169.1.2
1preA/1preA-YGR030C-global-adpstyle1.a2m 2.1052e+012.8018e+01 1preA f.8.1.1
d.169.1.2
1preA/1preA-YGR030C-global-adpstyle5.a2m 2.1052e+012.8018e+01 1preA f.8.1.1
d.169.1.2
1preA/YGR030C-1preA-global-str-0.3-adpstyle5.a2m 2.1052e+013.3404e+01 1preA f.8.1.1
d.169.1.2
3rubL/YGR030C-3rubL-global-adpstyle1.a2m 2.3335e+014.0428e+01 1burA c.1.14.1
d.58.9.1
3rubL/YGR030C-3rubL-global-adpstyle5.a2m 2.3335e+014.0428e+01 1burA c.1.14.1
d.58.9.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001