# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mldA	314	7.89e-01	2cmd	c.2.1.5	30122
				d.162.1.1	42089
1efyA	350	5.38e+00	1a26	a.41.1.1	17413
				d.166.1.2	42275
1e4fT	419	6.01e+00	1e4fT	c.55.1.1	33453
				c.55.1.1	33454
1mdl	359	8.01e+00	2mnr	c.1.11.2	29247
				d.54.1.1	38891
2mnr	357	8.97e+00	2mnr	c.1.11.2	29245
				d.54.1.1	38889
1ptf	88	9.47e+00	1ptf	d.94.1.1	40549
1preA	470	9.63e+00	1preA	d.169.1.2	42437
				f.8.1.1	43824
1cjsA	219	1.05e+01	1cjsA	e.24.1.1	43354
1kllA	130	1.10e+01			
1fp2A	352	1.10e+01	1fpxA	a.4.5.29	59941
				c.66.1.12	59942
1jkmB	361	1.29e+01	1jkmA	c.69.1.2	34634
1a26	361	1.29e+01	1a26	a.41.1.1	17412
				d.166.1.2	42274
1k7hA	476	1.32e+01			
1gk8A	475	1.43e+01		c.1.14.1	65234
				d.58.9.1	65235
1rcf	169	1.50e+01	1rcf	c.23.5.1	31170
1fpxA	352	1.54e+01	1fpxA	a.4.5.29	59950
				c.66.1.12	59951
1qfrA	89	1.60e+01	1ptf	d.94.1.1	40552
1jkmA	358	1.70e+01	1jkmA	c.69.1.2	34633
1ibsA	317	1.76e+01		c.61.1.2	66107
				c.61.1.2	66108
1kk1A	410	1.77e+01			
1ig8A	486	1.82e+01	2yhx	c.55.1.3	64746
				c.55.1.3	64747
1dkrA	317	1.93e+01	1dkuA	c.61.1.2	34114
				c.61.1.2	34115
1j5yA	187	1.93e+01			
1rxr	83	1.99e+01	2nllB	g.39.1.2	45114
1jqeA	292	2.02e+01			
1ihmA	530	2.03e+01	1ihmA	b.10.1.4	62385
1gw0A	559	2.12e+01			
1dkuA	317	2.23e+01	1dkuA	c.61.1.2	34118
				c.61.1.2	34119
1tubA	440	2.26e+01	1tubA	c.32.1.1	31751
				d.79.2.1	39803
8rucA	475	2.28e+01	1burA	c.1.14.1	29339
				d.58.9.1	39245
1ofv	169	2.48e+01	1rcf	c.23.5.1	31184
1preB	470	2.49e+01	1preA	d.169.1.2	42438
				f.8.1.1	43825
1j4aA	333	2.51e+01			
1cznA	169	2.55e+01	1rcf	c.23.5.1	31181
1qfoC	119	2.94e+01	1qfoA	b.1.1.1	19710
1ko7A	314	3.08e+01			
1aoa	275	3.10e+01	1aoa	a.40.1.1	17396
				a.40.1.1	17397
1d2kA	392	3.17e+01	1d2kA	c.1.8.5	29008
				d.26.3.1	38442
1nlr	234	3.19e+01	2nlrA	b.29.1.11	24345
2nlrA	234	3.20e+01	2nlrA	b.29.1.11	24344
1h77A	605	3.31e+01			
1jkxA	212	3.40e+01		c.65.1.1	66813
1garA	212	3.42e+01	2gar	c.65.1.1	34162
2gar	212	3.52e+01	2gar	c.65.1.1	34161
1iu4A	331	3.69e+01			
1dszB	85	3.71e+01	2nllB	g.39.1.2	45108
1k55A	246	3.71e+01		e.3.1.1	68156
1fviA	297	3.72e+01	1fviA	b.40.4.6	25364
				d.142.2.1	41578
1k4fA	248	3.81e+01		e.3.1.1	68138
1cne	270	3.86e+01	1ndh	b.43.4.2	25661
				c.25.1.1	31551