# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mldA 314 7.28e-01 2cmd c.2.1.5 30122 d.162.1.1 42089 1preB 470 1.51e+00 1preA d.169.1.2 42438 f.8.1.1 43825 1preA 470 2.59e+00 1preA d.169.1.2 42437 f.8.1.1 43824 1qfrA 89 4.79e+00 1ptf d.94.1.1 40552 1mdl 359 6.36e+00 2mnr c.1.11.2 29247 d.54.1.1 38891 1jqeA 292 6.52e+00 1ptf 88 6.72e+00 1ptf d.94.1.1 40549 2mnr 357 7.14e+00 2mnr c.1.11.2 29245 d.54.1.1 38889 1dkuA 317 8.93e+00 1dkuA c.61.1.2 34118 c.61.1.2 34119 1cznA 169 1.02e+01 1rcf c.23.5.1 31181 1ofv 169 1.02e+01 1rcf c.23.5.1 31184 1a26 361 1.05e+01 1a26 a.41.1.1 17412 d.166.1.2 42274 1gk8A 475 1.12e+01 c.1.14.1 65234 d.58.9.1 65235 1dkrA 317 1.15e+01 1dkuA c.61.1.2 34114 c.61.1.2 34115 1k7hA 476 1.16e+01 1efyA 350 1.19e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1ibsA 317 1.21e+01 c.61.1.2 66107 c.61.1.2 66108 1ig8A 486 1.41e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1gt7A 274 1.44e+01 1e4fT 419 1.55e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1bn7A 294 1.59e+01 1bn6A c.69.1.8 34677 1cqwA 295 1.59e+01 1b6g c.69.1.8 34679 1bn6A 294 1.60e+01 1bn6A c.69.1.8 34678 1tubA 440 1.73e+01 1tubA c.32.1.1 31751 d.79.2.1 39803 1qguB 519 1.74e+01 1qguB c.92.2.3 35626 1qh8B 519 1.75e+01 1qguB c.92.2.3 35634 1kk1A 410 1.80e+01 8rucA 475 1.88e+01 1burA c.1.14.1 29339 d.58.9.1 39245 1fkx 349 1.97e+01 1a4mA c.1.9.1 29018 1a4mA 349 2.08e+01 1a4mA c.1.9.1 29014 1f7cA 231 2.29e+01 1f7cA a.116.1.1 19107 1rcf 169 2.32e+01 1rcf c.23.5.1 31170 1ihmA 530 2.50e+01 1ihmA b.10.1.4 62385 1nsf 273 2.65e+01 1d2nA c.37.1.13 32429 1qfoC 119 2.73e+01 1qfoA b.1.1.1 19710 1auz 116 2.80e+01 1auz c.13.2.1 30883 1jkmB 361 2.84e+01 1jkmA c.69.1.2 34634 1a7aA 432 2.85e+01 1b3rA c.2.1.4 30104 c.23.12.3 31364 1caj 260 2.97e+01 2cba b.74.1.1 27841 1jffA 451 2.98e+01 c.32.1.1 62932 d.79.2.1 62933 1jkmA 358 2.99e+01 1jkmA c.69.1.2 34633 1bla 155 3.04e+01 1bfg b.42.1.1 25502 1cjsA 219 3.09e+01 1cjsA e.24.1.1 43354 1hy3A 294 3.34e+01 2gar 212 3.39e+01 2gar c.65.1.1 34161 1eo6A 117 3.41e+01 1eo6A d.15.1.3 37609 1lu9A 287 3.41e+01 1add 349 3.44e+01 1a4mA c.1.9.1 29020 2cba 260 3.50e+01 2cba b.74.1.1 27821 1lk3A 160 3.57e+01 6prcL 273 3.59e+01 6prcL f.2.1.2 43434 1gw0A 559 3.63e+01 1fxmA 302 3.64e+01 1taxA c.1.8.3 60105 1k6aA 303 3.65e+01 1garA 212 3.65e+01 2gar c.65.1.1 34162 1gokA 303 3.66e+01 c.1.8.3 65420 1dxrL 273 3.68e+01 6prcL f.2.1.2 43431 1jkxA 212 3.69e+01 c.65.1.1 66813 1h0xA 100 3.75e+01 3chbD 104 3.79e+01 3chbD b.40.2.1 24970 1b3rA 431 3.81e+01 1b3rA c.2.1.4 30106 c.23.12.3 31366 1fpxA 352 3.88e+01 1fpxA a.4.5.29 59950 c.66.1.12 59951