# List of top-scoring protein chains for YGR029W.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 125 6.49e-30 a.24.15.1 87264 1jr8A 117 2.37e-25 a.24.15.1 67115 1ct9A 553 5.58e-02 1ct9A c.26.2.1 31616 d.153.1.1 41834 1eyvA 156 3.11e-01 1eyvA a.79.1.1 18446 1ldjB 90 5.50e-01 g.44.1.1 73850 1dgjA 907 7.39e-01 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1ag9A 175 7.63e-01 1rcf c.23.5.1 31178 1jnuA 104 1.22e+00 d.110.3.6 71762 2drpA 66 1.27e+00 2drpA g.37.1.1 45026 g.37.1.1 45027 1h4rA 314 1.88e+00 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1isnA 323 1.94e+00 a.11.2.1 71400 b.55.1.5 71401 d.15.1.4 71402 1dmhA 311 2.06e+00 1dmhA b.3.6.1 22633 2adr 60 2.20e+00 2adr g.37.1.1 45030 g.37.1.1 45031 1pstH 237 2.78e+00 6prcH b.41.1.1 25480 f.23.10.1 43505 1ogvH 250 2.87e+00 1aijH 260 2.96e+00 6prcH b.41.1.1 25466 f.23.10.1 43463 1qovH 260 2.97e+00 6prcH b.41.1.1 25464 f.23.10.1 43457 1i1oA 147 3.01e+00 5nul c.23.5.1 61542 1j9eA 147 3.02e+00 c.23.5.1 62756 1azl 147 3.17e+00 5nul c.23.5.1 31154 1znf 26 3.83e+00 g.37.1.1 45036 1njqA 38 3.93e+00 g.37.1.3 85822 1knb 196 4.29e+00 1qhvA b.21.1.1 23841 1akw 147 4.52e+00 5nul c.23.5.1 31153 1hgxA 183 4.52e+00 1tc1A c.61.1.1 34027 1fb5A 320 4.60e+00 1jt2A 268 4.83e+00 c.69.1.2 71858 1jjfA 268 4.91e+00 c.69.1.2 66765 1fx1 148 4.93e+00 1rcf c.23.5.1 31169 1f4pA 147 4.97e+00 5nul c.23.5.1 59651 1c7fA 147 4.99e+00 5nul c.23.5.1 31163 1j9gA 147 5.31e+00 c.23.5.1 62757 1j8qA 147 5.33e+00 c.23.5.1 62744 1bu5A 147 5.33e+00 5nul c.23.5.1 31155 1akr 147 5.71e+00 1rcf c.23.5.1 31152 1akt 147 6.39e+00 5nul c.23.5.1 31157 1ku1A 230 6.89e+00 a.118.3.1 72996 1g2fC 90 7.11e+00 k.12.1.1 60222 1kqhA 38 8.12e+00 g.3.6.2 68810 1eyeA 280 8.86e+00 1aj2 c.1.21.1 29672 1k5dB 201 9.20e+00 b.55.1.3 68169 1mhqA 148 9.61e+00 a.118.9.2 84973 1akq 147 9.71e+00 5nul c.23.5.1 31159 1cc8A 73 9.81e+00 1cc8A d.58.17.1 39343 1zbdB 134 1.03e+01 1zbdB g.50.1.1 45359 1kt2A 182 1.06e+01 b.1.1.2 72951 d.19.1.1 72952 1ktdA 182 1.10e+01 b.1.1.2 72964 d.19.1.1 72965 1h6xA 170 1.14e+01 b.18.1.7 70903 1jj2P 95 1.30e+01 1ffkN b.34.5.1 63101 1cn2 66 1.37e+01 1aho g.3.7.1 44129 1fngA 192 1.42e+01 1iakA b.1.1.2 59904 d.19.1.1 59905 1i3rA 192 1.44e+01 1iakA b.1.1.2 61620 d.19.1.1 61621 1izlF 44 1.44e+01 i.5.1.1 76999 1h6wA 312 1.46e+01 b.108.1.1 83060 d.231.1.1 83059 1mjyA 175 1.55e+01 2prd b.40.5.1 25421 1d03A 169 1.57e+01 1rcf c.23.5.1 31182 1faj 175 1.57e+01 2prd b.40.5.1 25429 1mjz 175 1.59e+01 2prd b.40.5.1 25433 1l0cA 207 1.59e+01 d.108.1.1 73393 1avgI 142 1.60e+01 1avgI b.60.1.3 27229 1ieaA 192 1.62e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1i40A 175 1.62e+01 b.40.5.1 66024 1ktmA 139 1.63e+01 a.24.14.1 77541 1nxuA 333 1.65e+01 c.122.1.1 86389 1jdqA 98 1.67e+01 d.68.3.3 66559 1pznA 349 1.76e+01 1dyoA 160 1.77e+01 1dyoA b.18.1.7 23771 1k40A 126 1.78e+01 a.24.14.1 68123 1kpiA 302 1.78e+01 c.66.1.18 68743 2fb4H 229 1.80e+01 1igtB b.1.1.1 19847 b.1.1.2 20951 1g2dC 90 1.81e+01 k.12.1.1 60220 1meyC 87 1.86e+01 2gliA k.12.1.1 46430 1mjwA 175 1.87e+01 2prd b.40.5.1 25419 1ewiA 114 1.89e+01 1ewiA b.40.4.3 25302 1h6yA 170 2.02e+01 b.18.1.7 70904 1mjxA 175 2.04e+01 2prd b.40.5.1 25430 7znf 30 2.05e+01 g.37.1.1 45038 1kwdA 16 2.14e+01 j.33.1.1 84473 1pkgA 327 2.16e+01 1cznA 169 2.16e+01 1rcf c.23.5.1 31181 1czrA 169 2.17e+01 1rcf c.23.5.1 31187 1czkA 169 2.21e+01 1rcf c.23.5.1 31186 1m2mA 82 2.26e+01 d.120.1.1 84755 1pdiA 278 2.27e+01 1cjwA 166 2.29e+01 1cjwA d.108.1.1 40818 1b6bA 174 2.33e+01 1cjwA d.108.1.1 40819 1i5uA 82 2.48e+01 1cyo d.120.1.1 61824 1othA 321 2.55e+01 1othA c.78.1.1 35260 c.78.1.1 35261 1m2iA 82 2.57e+01 d.120.1.1 84752 1dueA 242 2.66e+01 b.47.1.1 76140 1ngkA 128 2.78e+01 a.1.1.1 85673 2abk 211 2.81e+01 2abk a.96.1.1 18743 1agjA 242 2.82e+01 1agjA b.47.1.1 25827 1mqrA 679 2.84e+01 1k9fA 679 2.87e+01 c.1.8.10 77296 d.92.2.2 77297 1mqpA 679 2.87e+01 1l8nA 679 2.89e+01 c.1.8.10 84564 d.92.2.2 84565 1ib1E 200 2.89e+01 1cjwA d.108.1.1 62137 1kuxA 207 2.94e+01 d.108.1.1 73021 1es1A 82 2.95e+01 1cyo d.120.1.1 41067 1e5tA 710 2.96e+01 1qfmA b.69.7.1 27676 c.69.1.4 34644 1dgsA 667 2.99e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1o6gA 710 3.06e+01 b.69.7.1 81087 c.69.1.4 81088 1ehbA 82 3.08e+01 1cyo d.120.1.1 41066 1jrfA 47 3.20e+01 g.12.1.1 71824 1h2wA 710 3.22e+01 b.69.7.1 76596 c.69.1.4 76597 1o6fA 710 3.23e+01 b.69.7.1 81085 c.69.1.4 81086 1m20A 82 3.24e+01 d.120.1.1 78461 1e8nA 710 3.24e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1lr6A 82 3.30e+01 d.120.1.1 78158 1m59A 82 3.30e+01 d.120.1.1 84807 1h2xA 710 3.48e+01 b.69.7.1 76598 c.69.1.4 76599 1eexA 554 3.55e+01 1dioA c.1.19.3 29650 1fw9A 164 3.65e+01 1fw9A d.190.1.1 60059 1cokA 68 3.68e+01 1cokA a.60.1.2 17945 1c6vA 164 3.79e+01 1b9dA c.55.3.2 33672