# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 125 4.22e-22 a.24.15.1 87264 1jr8A 117 4.45e-19 a.24.15.1 67115 1jraA 117 8.02e-19 a.24.15.1 67117 1eyvA 156 3.19e-01 1eyvA a.79.1.1 18446 1euvA 221 5.87e-01 1euvA d.3.1.7 37133 1p8cA 145 7.51e-01 1ngkA 128 8.53e-01 a.1.1.1 85673 1jvr 137 8.74e-01 1jvr a.61.1.2 18132 1dgjA 907 1.21e+00 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1ku1A 230 1.55e+00 a.118.3.1 72996 1mlwA 301 1.77e+00 d.178.1.1 79289 1ciy 590 2.82e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1iwhA 141 3.02e+00 a.1.1.2 76882 1a32 88 3.79e+00 1a32 a.16.1.2 16384 1je8A 82 4.77e+00 a.4.6.2 77108 1agi 125 5.18e+00 7rsa d.5.1.1 37303 1hlrA 907 5.29e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 4enl 436 5.58e+00 4enl c.1.11.1 29202 d.54.1.1 38846 1cc8A 73 6.10e+00 1cc8A d.58.17.1 39343 2abk 211 6.40e+00 2abk a.96.1.1 18743 1jwhA 337 6.75e+00 d.144.1.7 71913 1g8iA 190 6.76e+00 1rec a.39.1.5 60363 1hyvA 166 7.00e+00 1b9dA c.55.3.2 61424 1jjfA 268 7.04e+00 c.69.1.2 66765 1abwA 283 7.77e+00 1abwA a.1.1.2 15288 a.1.1.2 15289 1j7yA 141 7.81e+00 a.1.1.2 66426 1babA 143 7.94e+00 1abwA a.1.1.2 15235 1oneA 436 8.39e+00 4enl c.1.11.1 29200 d.54.1.1 38844 1jenB 67 8.44e+00 1jenB d.156.1.1 42029 1ha2A 585 9.40e+00 1bj5 a.126.1.1 60866 a.126.1.1 60867 a.126.1.1 60868 1b9dA 163 9.58e+00 1b9dA c.55.3.2 33649 1pov1 302 1.11e+01 1pov1 1gg3A 279 1.14e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1g4yR 148 1.14e+01 1cll a.39.1.5 60252 1m2rA 327 1.15e+01 d.144.1.7 84760 1kyoD 248 1.16e+01 a.3.1.3 73254 f.23.11.1 73255 1bev1 281 1.16e+01 1aym1 1toh 343 1.20e+01 4pah d.178.1.1 42573 1if1A 113 1.22e+01 2irfG a.4.5.23 16183 1kb9D 246 1.27e+01 a.3.1.3 77317 f.23.11.1 77318 1tbgE 68 1.36e+01 1tbgE a.137.3.1 19630 1gotG 73 1.36e+01 1tbgE a.137.3.1 19629 1okgA 373 1.48e+01 1o6eA 235 1.50e+01 b.57.1.1 81083 1be3D 241 1.59e+01 1be3D a.3.1.3 15955 f.23.11.1 43666 2sas 185 1.65e+01 2sas a.39.1.5 17258 1qhtA 775 1.66e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1qopB 396 1.70e+01 2tysB c.79.1.1 35270 1a04A 215 1.71e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1bl3A 160 1.79e+01 1b9dA c.55.3.2 33655 1o2dA 371 1.89e+01 e.22.1.2 86591 1j5rA 371 1.89e+01 1pbwA 216 1.90e+01 1pbwA a.116.1.1 19103 1fxxA 482 1.93e+01 1fxxA c.55.3.5 33726 1cs1A 386 1.94e+01 1ibjA c.67.1.3 34399 1b9xB 68 1.95e+01 1tbgE a.137.3.1 19638 1phd 414 2.01e+01 1phd a.104.1.1 18913 2occM 46 2.02e+01 2occM f.23.7.1 43527 1d5rA 324 2.04e+01 1d5rA b.7.1.1 23181 c.45.1.1 32697 1q8cA 151 2.06e+01 1hzfA 367 2.20e+01 a.102.4.4 76731 1ezvD 245 2.20e+01 1be3D a.3.1.3 59546 f.23.11.1 59547 1bj5 585 2.28e+01 1bj5 a.126.1.1 19369 a.126.1.1 19370 a.126.1.1 19371 1g8lA 411 2.29e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1gio 125 2.32e+01 7rsa d.5.1.1 37304 1k8yB 396 2.35e+01 c.79.1.1 72184 1tgoA 773 2.43e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1itg 166 2.48e+01 1b9dA c.55.3.2 33661 1e7aA 585 2.48e+01 1bj5 a.126.1.1 19360 a.126.1.1 19361 a.126.1.1 19362 1n5uA 585 2.76e+01 a.126.1.1 85339 a.126.1.1 85340 a.126.1.1 85341 1hbyA 123 2.77e+01 7rsa d.5.1.1 60936 1ao6A 585 2.77e+01 1bj5 a.126.1.1 19354 a.126.1.1 19355 a.126.1.1 19356 1ibjA 464 2.78e+01 1ibjA c.67.1.3 62162 1ppfE 218 2.82e+01 1a7s b.47.1.2 26234 1esxA 96 2.92e+01 1esxA j.11.1.1 59501 1cjwA 166 3.04e+01 1cjwA d.108.1.1 40818 1iufA 144 3.06e+01 a.4.1.7 71439 a.4.1.7 71440 1j8uA 325 3.16e+01 d.178.1.1 71611 1jj2L 194 3.16e+01 1ffkI d.12.1.2 63097 1ac5 483 3.27e+01 1ac5 c.69.1.5 34653 1jfvA 131 3.28e+01 c.44.1.1 66654 1k59A 123 3.36e+01 d.5.1.1 72073 1mqvA 125 3.39e+01 a.24.3.2 79415 1dxsA 80 3.42e+01 1cokA a.60.1.2 17944 1m6bA 621 3.43e+01 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 2itg 163 3.46e+01 1b9dA c.55.3.2 33669 1ysc 421 3.51e+01 1ivyA c.69.1.5 34652 1jwwA 80 3.52e+01 d.58.17.1 71919 1ljrA 244 3.55e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1sw6A 327 3.57e+01 1sw6A d.211.1.1 19176 1mhqA 148 3.59e+01 a.118.9.2 84973 1fd8A 73 3.60e+01 1cc8A d.58.17.1 59770 1j5sA 463 3.66e+01 c.1.9.8 71580 1fa4A 105 3.67e+01 1plc b.6.1.1 22867 1ystH 260 3.68e+01 6prcH b.41.1.1 25482 f.23.10.1 43511 1dwtA 153 3.68e+01 1a6m a.1.1.2 15190 7aatA 401 3.70e+01 1ajsA c.67.1.1 34250 1ez3A 127 3.70e+01 1dn1B a.47.2.1 17768 1o98A 511 3.75e+01 c.105.1.1 86684 c.76.1.3 86685 2tysB 397 3.76e+01 2tysB c.79.1.1 35272 1gjnA 153 3.81e+01 a.1.1.2 70191 1mkaA 171 3.81e+01 1mkaA d.38.1.2 38543 1ejjA 511 3.87e+01 1ejjA c.105.1.1 59422 c.76.1.3 59423 1fr2B 134 3.89e+01 d.4.1.1 83257 1oxjA 173 3.89e+01 a.60.1.2 87517 a.118.1.13 87518 1phg 414 3.93e+01 1phd a.104.1.1 18910 1cs1C 386 3.94e+01 1ibjA c.67.1.3 34401 1dw9A 156 3.96e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1dwkA 156 3.96e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1a7vA 125 3.97e+01 1cpq a.24.3.2 16562 1qsaA 618 3.99e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988