# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 125 4.29e-24 a.24.15.1 87264 1jraA 117 4.51e-21 a.24.15.1 67117 1jr8A 117 4.83e-21 a.24.15.1 67115 1euvA 221 9.39e-02 1euvA d.3.1.7 37133 1eyvA 156 1.23e-01 1eyvA a.79.1.1 18446 1ku1A 230 2.59e-01 a.118.3.1 72996 1ngkA 128 3.42e-01 a.1.1.1 85673 1p8cA 145 5.78e-01 1dgjA 907 7.96e-01 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1iwhA 141 8.71e-01 a.1.1.2 76882 1jjfA 268 1.82e+00 c.69.1.2 66765 1ciy 590 2.06e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1cc8A 73 2.75e+00 1cc8A d.58.17.1 39343 1mhqA 148 3.44e+00 a.118.9.2 84973 1fd8A 73 4.50e+00 1cc8A d.58.17.1 59770 1a32 88 5.01e+00 1a32 a.16.1.2 16384 1je8A 82 5.53e+00 a.4.6.2 77108 1okgA 373 5.72e+00 1agi 125 6.45e+00 7rsa d.5.1.1 37303 1g4yR 148 6.71e+00 1cll a.39.1.5 60252 2abk 211 6.96e+00 2abk a.96.1.1 18743 1irdA 141 7.10e+00 a.1.1.2 66286 2oneA 436 7.37e+00 4enl c.1.11.1 29203 d.54.1.1 38847 1abwA 283 7.58e+00 1abwA a.1.1.2 15288 a.1.1.2 15289 1babA 143 7.95e+00 1abwA a.1.1.2 15235 1j7yA 141 8.01e+00 a.1.1.2 66426 1hlrA 907 8.68e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 3cln 148 8.71e+00 1cll a.39.1.5 17286 1kyoD 248 8.97e+00 a.3.1.3 73254 f.23.11.1 73255 4enl 436 9.14e+00 4enl c.1.11.1 29202 d.54.1.1 38846 1mlwA 301 9.68e+00 d.178.1.1 79289 1o6eA 235 9.83e+00 b.57.1.1 81083 1gio 125 9.88e+00 7rsa d.5.1.1 37304 1ezvD 245 1.03e+01 1be3D a.3.1.3 59546 f.23.11.1 59547 1kb9D 246 1.03e+01 a.3.1.3 77317 f.23.11.1 77318 1iu8A 206 1.19e+01 c.56.4.1 71436 1kw4A 89 1.19e+01 a.60.1.2 73077 1dmhA 311 1.24e+01 1dmhA b.3.6.1 22633 1guzA 310 1.28e+01 c.2.1.5 65586 d.162.1.1 65587 1q8cA 151 1.32e+01 1esxA 96 1.53e+01 1esxA j.11.1.1 59501 1jflA 228 1.59e+01 c.78.2.1 71656 c.78.2.1 71657 1mkaA 171 1.61e+01 1mkaA d.38.1.2 38543 1dw9A 156 1.68e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1dwkA 156 1.70e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1nn7A 105 1.73e+01 d.42.1.2 85894 1g8iA 190 1.75e+01 1rec a.39.1.5 60363 1b9xB 68 1.80e+01 1tbgE a.137.3.1 19638 1m6bA 621 1.81e+01 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 1ysc 421 1.84e+01 1ivyA c.69.1.5 34652 1a04A 215 1.84e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 4rnpA 883 1.94e+01 1cezA e.8.1.3 43113 1hyeA 313 1.95e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1f6dA 376 1.96e+01 1f6dA c.87.1.3 35467 1myf 153 1.97e+01 1a6m a.1.1.2 15147 1tbgE 68 2.00e+01 1tbgE a.137.3.1 19630 1cjwA 166 2.01e+01 1cjwA d.108.1.1 40818 1drtA 324 2.01e+01 1drtA b.82.2.2 28130 1qovH 260 2.13e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1oneA 436 2.20e+01 4enl c.1.11.1 29200 d.54.1.1 38844 1ystH 260 2.27e+01 6prcH b.41.1.1 25482 f.23.10.1 43511 1mg7A 417 2.29e+01 d.14.1.6 84954 d.58.26.6 84955 1sw6A 327 2.35e+01 1sw6A d.211.1.1 19176 1jwgA 147 2.36e+01 a.118.9.2 71911 3kvt 115 2.41e+01 1t1dA d.42.1.2 38642 1pnkA 209 2.43e+01 1ajqA d.153.1.2 41839 1ngvA 534 2.50e+01 c.111.1.2 85698 1iapA 211 2.51e+01 a.91.1.1 62119 1ds1A 324 2.57e+01 1drtA b.82.2.2 28127 1eyeA 280 2.63e+01 1aj2 c.1.21.1 29672 1gotG 73 2.66e+01 1tbgE a.137.3.1 19629 1i3zA 103 2.76e+01 d.93.1.1 83667 1dryA 324 2.77e+01 1drtA b.82.2.2 28128 1dwtA 153 2.80e+01 1a6m a.1.1.2 15190 1gxqA 106 2.86e+01 a.4.6.1 70721 1gjnA 153 3.01e+01 a.1.1.2 70191 1ai7A 209 3.04e+01 1ajqA d.153.1.2 41845 1bw0A 416 3.16e+01 1bw0A c.67.1.1 34385 1fbmC 46 3.17e+01 1fbmC h.1.7.1 45587 1n9dA 199 3.20e+01 a.26.1.1 85464 1be3D 241 3.20e+01 1be3D a.3.1.3 15955 f.23.11.1 43666 1ajqA 209 3.24e+01 1ajqA d.153.1.2 41840 1jvr 137 3.25e+01 1jvr a.61.1.2 18132 1itg 166 3.25e+01 1b9dA c.55.3.2 33661 1dgmA 363 3.29e+01 1bx4A c.72.1.1 34936 1if1A 113 3.30e+01 2irfG a.4.5.23 16183 1g8lA 411 3.41e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1b75A 94 3.43e+01 1dfuP b.53.1.1 26937 1f1eA 154 3.48e+01 a.22.1.2 64927 1pyp 285 3.51e+01 1wgjA b.40.5.1 25409 1n9bA 265 3.56e+01 e.3.1.1 85463 1ljrA 244 3.62e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1ee8A 266 3.63e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1iweA 457 3.64e+01 c.37.1.10 71486 1jwhA 337 3.65e+01 d.144.1.7 71913 1ko9A 345 3.66e+01 a.96.1.3 68717 d.129.1.2 68718 1pn1A 176 3.74e+01 1oxjA 173 3.80e+01 a.60.1.2 87517 a.118.1.13 87518 1e8nA 710 3.84e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1ilk 151 3.90e+01 2ilk a.26.1.3 16886 1h2wA 710 3.93e+01 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 3.93e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641