# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 125 2.02e-24 a.24.15.1 87264 1jraA 117 1.56e-21 a.24.15.1 67117 1jr8A 117 2.16e-21 a.24.15.1 67115 1euvA 221 6.28e-02 1euvA d.3.1.7 37133 1eyvA 156 2.05e-01 1eyvA a.79.1.1 18446 1ku1A 230 2.07e-01 a.118.3.1 72996 1p8cA 145 2.76e-01 1dgjA 907 5.65e-01 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1jvr 137 6.09e-01 1jvr a.61.1.2 18132 4enl 436 9.79e-01 4enl c.1.11.1 29202 d.54.1.1 38846 1ciy 590 1.25e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1bev1 281 1.71e+00 1aym1 1g4yR 148 1.95e+00 1cll a.39.1.5 60252 1je8A 82 2.14e+00 a.4.6.2 77108 1ngkA 128 2.15e+00 a.1.1.1 85673 1iwhA 141 2.29e+00 a.1.1.2 76882 1cc8A 73 2.36e+00 1cc8A d.58.17.1 39343 1oneA 436 3.04e+00 4enl c.1.11.1 29200 d.54.1.1 38844 1a32 88 3.08e+00 1a32 a.16.1.2 16384 1q8cA 151 3.25e+00 2abk 211 3.42e+00 2abk a.96.1.1 18743 1fxxA 482 3.71e+00 1fxxA c.55.3.5 33726 1fd8A 73 4.00e+00 1cc8A d.58.17.1 59770 2oneA 436 4.05e+00 4enl c.1.11.1 29203 d.54.1.1 38847 1pbwA 216 4.14e+00 1pbwA a.116.1.1 19103 1agi 125 4.28e+00 7rsa d.5.1.1 37303 1ky9A 448 4.30e+00 b.36.1.4 73198 b.47.1.1 73199 1hlrA 907 4.36e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1o6eA 235 4.81e+00 b.57.1.1 81083 1gg3A 279 5.25e+00 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1mlwA 301 5.96e+00 d.178.1.1 79289 1m6bA 621 6.26e+00 c.10.2.5 74521 c.10.2.5 74522 g.3.9.1 74523 g.3.9.1 74524 1guzA 310 6.45e+00 c.2.1.5 65586 d.162.1.1 65587 1okgA 373 6.76e+00 1o98A 511 6.93e+00 c.105.1.1 86684 c.76.1.3 86685 1eqjA 511 7.37e+00 1ejjA c.105.1.1 59495 c.76.1.3 59496 1jjfA 268 7.38e+00 c.69.1.2 66765 1hxs1 302 7.44e+00 1ejjA 511 7.86e+00 1ejjA c.105.1.1 59422 c.76.1.3 59423 1pov1 302 7.91e+00 1pov1 1hyvA 166 8.33e+00 1b9dA c.55.3.2 61424 1b9dA 163 8.71e+00 1b9dA c.55.3.2 33649 1pyp 285 8.81e+00 1wgjA b.40.5.1 25409 1a04A 215 8.89e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1jenB 67 8.94e+00 1jenB d.156.1.1 42029 1jroB 777 9.61e+00 d.41.1.1 67141 d.133.1.1 67142 1hyeA 313 1.01e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1eyeA 280 1.06e+01 1aj2 c.1.21.1 29672 1kgnA 329 1.07e+01 a.25.1.2 68584 1jwwA 80 1.09e+01 d.58.17.1 71919 1bg0 356 1.10e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1fua 215 1.14e+01 2fua c.74.1.1 34973 1irdA 141 1.17e+01 a.1.1.2 66286 1tbgE 68 1.19e+01 1tbgE a.137.3.1 19630 1m15A 357 1.22e+01 a.83.1.1 78368 d.128.1.2 78369 2fua 215 1.22e+01 2fua c.74.1.1 34977 1g8iA 190 1.24e+01 1rec a.39.1.5 60363 1abwA 283 1.25e+01 1abwA a.1.1.2 15288 a.1.1.2 15289 1itg 166 1.29e+01 1b9dA c.55.3.2 33661 1ngvA 534 1.34e+01 c.111.1.2 85698 1dszA 86 1.36e+01 2nllB g.39.1.2 45129 1j7yA 141 1.38e+01 a.1.1.2 66426 1babA 143 1.39e+01 1abwA a.1.1.2 15235 1auk 489 1.41e+01 1auk c.76.1.2 35030 1ha2A 585 1.50e+01 1bj5 a.126.1.1 60866 a.126.1.1 60867 a.126.1.1 60868 1dw9A 156 1.50e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1bl3A 160 1.54e+01 1b9dA c.55.3.2 33655 1sw6A 327 1.54e+01 1sw6A d.211.1.1 19176 1b75A 94 1.56e+01 1dfuP b.53.1.1 26937 1dwtA 153 1.60e+01 1a6m a.1.1.2 15190 1b9xB 68 1.62e+01 1tbgE a.137.3.1 19638 1f4tA 368 1.62e+01 1f4tA a.104.1.1 18973 1ah7 245 1.62e+01 1ah7 a.124.1.1 19339 1dwkA 156 1.67e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1qnoA 344 1.69e+01 1qnoA c.1.8.3 28838 1qnrA 344 1.70e+01 1qnoA c.1.8.3 28834 1mkaA 171 1.71e+01 1mkaA d.38.1.2 38543 1ystH 260 1.72e+01 6prcH b.41.1.1 25482 f.23.10.1 43511 1aw0 72 1.73e+01 1aw0 d.58.17.1 39342 2sas 185 1.73e+01 2sas a.39.1.5 17258 1toh 343 1.74e+01 4pah d.178.1.1 42573 1gjnA 153 1.74e+01 a.1.1.2 70191 1oxjA 173 1.79e+01 a.60.1.2 87517 a.118.1.13 87518 1f6dA 376 1.86e+01 1f6dA c.87.1.3 35467 3cln 148 1.88e+01 1cll a.39.1.5 17286 1gotG 73 1.91e+01 1tbgE a.137.3.1 19629 1itf 165 1.93e+01 1b5l a.26.1.3 16899 1iu8A 206 1.95e+01 c.56.4.1 71436 4rxn 54 1.96e+01 1rb9 g.41.5.1 45226 1oaa 259 1.96e+01 1oaa c.2.1.2 29829 1kw4A 89 1.97e+01 a.60.1.2 73077 1fe0A 68 2.03e+01 1cc8A d.58.17.1 39345 1sep 261 2.05e+01 1oaa c.2.1.2 29830 1g8lA 411 2.10e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 4rnpA 883 2.10e+01 1cezA e.8.1.3 43113 1if1A 113 2.17e+01 2irfG a.4.5.23 16183 1ez3A 127 2.20e+01 1dn1B a.47.2.1 17768 1lnh 857 2.21e+01 1yge a.119.1.1 19237 b.12.1.1 23637 1gio 125 2.23e+01 7rsa d.5.1.1 37304 1bj5 585 2.28e+01 1bj5 a.126.1.1 19369 a.126.1.1 19370 a.126.1.1 19371 1vaoA 560 2.34e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 1myf 153 2.34e+01 1a6m a.1.1.2 15147 1iapA 211 2.48e+01 a.91.1.1 62119 1ee8A 266 2.50e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1qsdA 106 2.52e+01 1qsdA a.7.5.1 16335 1emvB 134 2.58e+01 1bxiB d.4.1.1 37135 1ebmA 317 2.58e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1ka3A 90 2.62e+01 a.150.1.1 72239 1fr2B 134 2.64e+01 d.4.1.1 83257 1cnt2 187 2.66e+01 1cnt3 1c1dA 355 2.78e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1n9bA 265 2.79e+01 e.3.1.1 85463 1qhtA 775 2.80e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1iro 54 2.85e+01 1rb9 g.41.5.1 45223 1jtkA 136 2.91e+01 c.97.1.1 71862 1lwyA 324 2.93e+01 a.96.1.3 78285 d.129.1.2 78286 1f3vA 179 2.98e+01 1f3vA d.58.22.1 39382 1ko9A 345 2.99e+01 a.96.1.3 68717 d.129.1.2 68718 1e4cP 215 3.02e+01 2fua c.74.1.1 34969 1cg5B 141 3.04e+01 1cg5B a.1.1.2 15585 1cjwA 166 3.04e+01 1cjwA d.108.1.1 40818 1no1A 126 3.07e+01 a.179.1.1 85913 1m2tA 254 3.07e+01 d.165.1.1 84761 1dttA 560 3.17e+01 1rthA c.55.3.1 33611 e.8.1.2 43088 1bxm 99 3.18e+01 1bxm a.134.1.1 19618 1lriA 98 3.26e+01 a.134.1.1 74223 2cblA 305 3.27e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1tgoA 773 3.28e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1mhqA 148 3.38e+01 a.118.9.2 84973 1isuA 62 3.39e+01 1isuA g.35.1.1 44978 1jj2P 95 3.41e+01 1ffkN b.34.5.1 63101 1hdlA 55 3.45e+01 g.57.1.1 65808 1e7wA 291 3.47e+01 c.2.1.2 59373 3lynA 136 3.48e+01 1lis a.19.1.1 16413 1l1zA 274 3.51e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1j5sA 463 3.53e+01 c.1.9.8 71580 1f45B 197 3.54e+01 1f45B a.26.1.1 59642 1gzsB 165 3.57e+01 a.168.1.1 76425 1mgn 154 3.60e+01 1a6m a.1.1.2 15097 1exqA 154 3.64e+01 1b9dA c.55.3.2 33646 1jidA 128 3.66e+01 d.201.1.1 66735 1dfuP 94 3.67e+01 1dfuP b.53.1.1 26936 1pnkA 209 3.67e+01 1ajqA d.153.1.2 41839 1dceB 331 3.68e+01 1dceB a.102.4.3 18872 1dn1B 267 3.72e+01 1dn1B a.47.2.1 17771 2nllA 66 3.72e+01 2nllB g.39.1.2 45109 1bbhA 131 3.73e+01 1bbhA a.24.3.2 16546 1jl0A 334 3.78e+01 1jenA d.156.1.1 63155 1j5rA 371 3.78e+01 1h2wA 710 3.80e+01 b.69.7.1 76596 c.69.1.4 76597 1beo 98 3.80e+01 1bxm a.134.1.1 19619 1pn1A 176 3.81e+01 1e8nA 710 3.91e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1aol 228 3.91e+01 1aol b.20.1.1 23840 1h2xA 710 3.91e+01 b.69.7.1 76598 c.69.1.4 76599 1jhb 106 3.94e+01 1kte c.47.1.1 32772 1qfmA 710 3.95e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1br0A 120 3.96e+01 a.47.2.1 17772