# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oqcA 125 6.17e-18 a.24.15.1 87264 1jraA 117 6.51e-16 a.24.15.1 67117 1jr8A 117 7.15e-16 a.24.15.1 67115 1euvA 221 3.55e-01 1euvA d.3.1.7 37133 1eyvA 156 5.56e-01 1eyvA a.79.1.1 18446 1dgjA 907 6.01e-01 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1ngkA 128 6.56e-01 a.1.1.1 85673 1jjfA 268 8.06e-01 c.69.1.2 66765 1p8cA 145 9.24e-01 1dmhA 311 1.27e+00 1dmhA b.3.6.1 22633 1iwhA 141 2.32e+00 a.1.1.2 76882 1je8A 82 2.33e+00 a.4.6.2 77108 1ku1A 230 2.68e+00 a.118.3.1 72996 1fd8A 73 3.49e+00 1cc8A d.58.17.1 59770 1fw9A 164 3.78e+00 1fw9A d.190.1.1 60059 1cc8A 73 3.80e+00 1cc8A d.58.17.1 39343 1hlrA 907 4.01e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1q8cA 151 4.05e+00 1ciy 590 4.14e+00 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1mhqA 148 4.39e+00 a.118.9.2 84973 1jvr 137 4.70e+00 1jvr a.61.1.2 18132 2abk 211 5.53e+00 2abk a.96.1.1 18743 1a04A 215 5.81e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1mlwA 301 5.84e+00 d.178.1.1 79289 1gxqA 106 6.68e+00 a.4.6.1 70721 1cg5B 141 6.90e+00 1cg5B a.1.1.2 15585 1cokA 68 7.13e+00 1cokA a.60.1.2 17945 1guzA 310 7.83e+00 c.2.1.5 65586 d.162.1.1 65587 1agi 125 8.00e+00 7rsa d.5.1.1 37303 1qfmA 710 8.04e+00 1qfmA b.69.7.1 27673 c.69.1.4 34641 1g8lA 411 8.05e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1dxsA 80 8.62e+00 1cokA a.60.1.2 17944 1h2xA 710 9.11e+00 b.69.7.1 76598 c.69.1.4 76599 1e8nA 710 9.44e+00 1qfmA b.69.7.1 27675 c.69.1.4 34643 1iatA 557 9.46e+00 1dqrA c.80.1.2 62123 1h2wA 710 1.06e+01 b.69.7.1 76596 c.69.1.4 76597 1qqiA 104 1.06e+01 1opc a.4.6.1 16233 1okgA 373 1.13e+01 1fg7A 356 1.22e+01 1gewA c.67.1.1 59819 1abwA 283 1.23e+01 1abwA a.1.1.2 15288 a.1.1.2 15289 1chd 203 1.23e+01 1chd c.40.1.1 32478 1gotG 73 1.24e+01 1tbgE a.137.3.1 19629 1iapA 211 1.36e+01 a.91.1.1 62119 1babA 143 1.56e+01 1abwA a.1.1.2 15235 1dgmA 363 1.57e+01 1bx4A c.72.1.1 34936 1hyeA 313 1.59e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1fnhA 271 1.61e+01 1fnhA b.1.2.1 21976 b.1.2.1 21977 b.1.2.1 21978 1itg 166 1.64e+01 1b9dA c.55.3.2 33661 1tbgE 68 1.64e+01 1tbgE a.137.3.1 19630 1fbmC 46 1.66e+01 1fbmC h.1.7.1 45587 1hm5A 558 1.66e+01 c.80.1.2 76717 1irdA 141 1.66e+01 a.1.1.2 66286 1gewA 356 1.68e+01 1gewA c.67.1.1 60470 1jwhA 337 1.72e+01 d.144.1.7 71913 1vdfA 46 1.73e+01 1vdfA h.1.7.1 45580 1j7yA 141 1.79e+01 a.1.1.2 66426 1b9xB 68 1.81e+01 1tbgE a.137.3.1 19638 1eo9B 241 1.82e+01 3pchM b.3.6.1 22826 1b75A 94 1.84e+01 1dfuP b.53.1.1 26937 1kgsA 225 1.85e+01 a.4.6.1 68596 c.23.1.1 68597 1cjwA 166 1.91e+01 1cjwA d.108.1.1 40818 1h6qA 168 1.96e+01 1h6qA b.88.1.2 60692 1iu8A 206 2.00e+01 c.56.4.1 71436 1aw0 72 2.05e+01 1aw0 d.58.17.1 39342 1dqrA 557 2.10e+01 1dqrA c.80.1.2 35305 1hxs1 302 2.21e+01 1kw4A 89 2.26e+01 a.60.1.2 73077 1pov1 302 2.27e+01 1pov1 1f45B 197 2.39e+01 1f45B a.26.1.1 59642 1bev1 281 2.39e+01 1aym1 1ajqA 209 2.45e+01 1ajqA d.153.1.2 41840 1j5sA 463 2.50e+01 c.1.9.8 71580 1dioA 554 2.50e+01 1dioA c.1.19.3 29656 1e5kA 201 2.51e+01 1fr9A c.68.1.8 34578 1ush 550 2.56e+01 1ush d.114.1.1 40923 d.159.1.2 42079 1pbwA 216 2.61e+01 1pbwA a.116.1.1 19103 1ai7A 209 2.69e+01 1ajqA d.153.1.2 41845 1kuxA 207 2.76e+01 d.108.1.1 73021 1rrpB 134 2.81e+01 1rrpB b.55.1.3 26995 1btkA 169 2.85e+01 1btkA b.55.1.1 26959 1gdc 72 2.86e+01 2nllB g.39.1.2 45127 1oyzA 280 2.87e+01 1btmA 252 2.93e+01 1amk c.1.1.1 28513 1mz9A 45 2.95e+01 h.1.7.1 79687 1pvdA 537 2.96e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1pn1A 176 3.01e+01 1gg3A 279 3.04e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1e3jA 352 3.05e+01 1e3jA b.35.1.2 24765 c.2.1.1 29781 1toh 343 3.12e+01 4pah d.178.1.1 42573 1o58A 303 3.12e+01 1f6dA 376 3.15e+01 1f6dA c.87.1.3 35467 1jwgA 147 3.17e+01 a.118.9.2 71911 1blr 137 3.21e+01 1hmt b.60.1.2 27208 1jenB 67 3.26e+01 1jenB d.156.1.1 42029 1pnkA 209 3.36e+01 1ajqA d.153.1.2 41839 1eexA 554 3.45e+01 1dioA c.1.19.3 29650 1eujA 166 3.54e+01 1eujA b.40.4.4 25316 1jwwA 80 3.60e+01 d.58.17.1 71919 1k3xA 262 3.61e+01 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1aol 228 3.65e+01 1aol b.20.1.1 23840 1dwtA 153 3.69e+01 1a6m a.1.1.2 15190 2nllA 66 3.71e+01 2nllB g.39.1.2 45109 1dszB 85 3.71e+01 2nllB g.39.1.2 45108 1bw9A 356 3.71e+01 1bw9A c.2.1.7 30274 c.58.1.1 33922 1g60A 260 3.77e+01 c.66.1.11 70151 1ee8A 266 3.80e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1j6nA 303 3.82e+01 c.79.1.1 71594 1ngvA 534 3.89e+01 c.111.1.2 85698