# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fonA 240 1.66e+00 5ptp b.47.1.2 26231 1n45A 233 1.87e+00 a.132.1.1 79981 1o4sA 389 2.15e+00 c.67.1.1 86620 1qkkA 155 2.50e+00 1dbwA c.23.1.1 31104 1ois 223 2.87e+00 1a36A e.15.1.1 43267 1l5zA 155 2.94e+00 c.23.1.1 77722 1kf6A 602 3.40e+00 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 1hlvA 131 3.71e+00 a.4.1.7 65854 a.4.1.7 65855 1rtwA 220 3.72e+00 1iq3A 110 3.87e+00 1iq3A a.39.1.6 62640 1lwdA 413 4.35e+00 c.77.1.1 78265 1peqA 714 4.46e+00 1h3fA 432 4.77e+00 c.26.1.1 76631 d.66.1.4 76632 1w7bA 339 4.78e+00 1klt 226 5.73e+00 5ptp b.47.1.2 26300 1oshA 232 5.76e+00 1pv6A 417 6.22e+00 1ljrA 244 6.24e+00 1ljrA a.45.1.1 17707 c.47.1.5 33001 1hizA 379 8.18e+00 c.1.8.3 65841 1lwyA 324 9.34e+00 a.96.1.3 78285 d.129.1.2 78286 1f7cA 231 1.02e+01 1f7cA a.116.1.1 19107 1qusA 322 1.04e+01 1ltm d.2.1.6 36991 1ltm 320 1.07e+01 1ltm d.2.1.6 36992 1lnrI 134 1.14e+01 1guxB 152 1.24e+01 1guxB a.74.1.3 18389 1ko9A 345 1.26e+01 a.96.1.3 68717 d.129.1.2 68718 1eemA 241 1.26e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1cqxA 403 1.26e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1qmhA 347 1.32e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1nn6A 228 1.35e+01 b.47.1.2 85893 1kxpD 458 1.37e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1paqA 189 1.38e+01 1dk8A 147 1.49e+01 1agrE a.91.1.1 18548 1m1cA 680 1.51e+01 e.42.1.1 78395 1g5yA 238 1.51e+01 1lbd a.123.1.1 60294 1hw1A 239 1.52e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1fftC 204 1.53e+01 1fftC f.25.1.1 43629 1go3F 107 1.57e+01 a.60.8.2 65407 1eh2 106 1.62e+01 1eh2 a.39.1.6 17339 1cpt 412 1.81e+01 1cpt a.104.1.1 18968 1mhyG 169 1.89e+01 1mtyG a.23.3.1 16518 1fqvJ 149 1.91e+01 1fqvD a.157.1.1 19266 d.42.1.1 38670 1siqA 392 1.93e+01 1s9pA 227 1.94e+01 1pjpA 226 1.94e+01 5ptp b.47.1.2 26301 1k30A 368 2.04e+01 c.112.1.1 68067 1k8eA 345 2.08e+01 1o17A 345 2.08e+01 a.46.2.1 80765 c.27.1.1 80766 1fqvD 149 2.11e+01 1fqvD a.157.1.1 19263 d.42.1.1 38667 1jk0B 345 2.16e+01 a.25.1.2 63143 1iuqA 367 2.20e+01 1sr7A 259 2.22e+01 1cipA 353 2.32e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1mroA 548 2.40e+01 1mroA a.89.1.1 18525 d.58.31.2 39443 1hbnA 549 2.40e+01 1mroA a.89.1.1 60898 d.58.31.2 60899 1om2A 95 2.43e+01 1om2A a.23.4.1 16520 1iqrA 420 2.53e+01 a.99.1.1 66275 c.28.1.1 66276 1e79D 482 2.53e+01 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1tu3F 79 2.66e+01 7catA 506 2.67e+01 1cf9A e.5.1.1 42781 1gkgA 136 2.75e+01 g.18.1.1 70219 g.18.1.1 70220 1r5qA 102 2.77e+01 1bed 181 2.77e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1pu6A 218 2.79e+01 1gxuA 91 2.79e+01 d.58.10.1 76378 1t07A 94 2.80e+01 1qq8A 214 2.84e+01 1qq8A 1iow 306 2.89e+01 1iow c.30.1.2 31713 d.142.1.1 41481 1n83A 270 3.02e+01 a.123.1.1 80276 1u11A 182 3.06e+01 1pt7A 437 3.08e+01 2dln 306 3.10e+01 1iow c.30.1.2 31715 d.142.1.1 41483 1q7eA 428 3.22e+01 1u08A 386 3.23e+01 1h67A 108 3.28e+01 a.40.1.1 65643 1j4nA 271 3.31e+01 f.19.1.1 71510 1wmuA 141 3.35e+01 1w53A 84 3.36e+01 1huw 166 3.43e+01 1huw a.26.1.1 16831 1j78A 458 3.46e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 1oe8A 211 3.50e+01 a.45.1.1 86905 c.47.1.5 86906 1hh8A 213 3.53e+01 1e96B a.118.8.1 61042 1sqnA 261 3.55e+01 1a28A 256 3.55e+01 1a28A a.123.1.1 19290 1eceA 358 3.56e+01 1eceA c.1.8.3 28813 1qcrA 446 3.58e+01 1be3A d.185.1.1 59025 d.185.1.1 59026 1v74B 87 3.59e+01 1myt 146 3.66e+01 1a6m a.1.1.2 15207 1bg4 302 3.70e+01 1taxA c.1.8.3 28806 1mlwA 301 3.79e+01 d.178.1.1 79289 1b31A 302 3.83e+01 1taxA c.1.8.3 28892 1nxcA 478 3.84e+01 1w0hA 204 3.86e+01 1d0bA 213 3.86e+01 1d0bA c.10.2.1 30866 1izcA 339 3.86e+01 c.1.12.5 83838 1el6B 219 3.92e+01 1el6B d.182.1.1 42607 1hx1B 114 3.93e+01 1hx1B a.7.7.1 61350 1uxtA 501 3.95e+01