# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fftC 204 6.56e-01 1fftC f.25.1.1 43629 1o4sA 389 1.17e+00 c.67.1.1 86620 1qkkA 155 1.30e+00 1dbwA c.23.1.1 31104 1l5zA 155 1.37e+00 c.23.1.1 77722 1fonA 240 2.43e+00 5ptp b.47.1.2 26231 1peqA 714 2.62e+00 1iq3A 110 4.46e+00 1iq3A a.39.1.6 62640 1w0hA 204 5.58e+00 1pu6A 218 6.49e+00 1t7rA 269 6.73e+00 1hlvA 131 6.99e+00 a.4.1.7 65854 a.4.1.7 65855 1v74B 87 7.21e+00 1qusA 322 7.59e+00 1ltm d.2.1.6 36991 1i37A 260 7.85e+00 1a28A a.123.1.1 61583 1paqA 189 8.38e+00 1ltm 320 8.80e+00 1ltm d.2.1.6 36992 1lwdA 413 1.01e+01 c.77.1.1 78265 1kf6A 602 1.02e+01 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 1g8iA 190 1.03e+01 1rec a.39.1.5 60363 1eemA 241 1.07e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1iqrA 420 1.07e+01 a.99.1.1 66275 c.28.1.1 66276 1mhyB 395 1.14e+01 1mtyB a.25.1.2 16781 1w7bA 339 1.15e+01 1f7cA 231 1.19e+01 1f7cA a.116.1.1 19107 1qmhA 347 1.25e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1sr7A 259 1.31e+01 1m1cA 680 1.35e+01 e.42.1.1 78395 1n45A 233 1.40e+01 a.132.1.1 79981 1a28A 256 1.42e+01 1a28A a.123.1.1 19290 1sqnA 261 1.49e+01 1k8eA 345 1.54e+01 1o17A 345 1.54e+01 a.46.2.1 80765 c.27.1.1 80766 1tqgA 105 1.56e+01 1cqxA 403 1.59e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1gkgA 136 1.61e+01 g.18.1.1 70219 g.18.1.1 70220 1ib2A 349 1.74e+01 1ib2A a.118.1.8 62141 1qq8A 214 1.78e+01 1qq8A 1w68A 390 1.78e+01 1h3fA 432 1.81e+01 c.26.1.1 76631 d.66.1.4 76632 1pv6A 417 1.96e+01 1h67A 108 2.01e+01 a.40.1.1 65643 1rtwA 220 2.02e+01 1pbp 321 2.03e+01 1ixh c.94.1.1 35768 1aq6A 253 2.05e+01 1qq5A c.108.1.1 43331 1n83A 270 2.10e+01 a.123.1.1 80276 1t07A 94 2.21e+01 1klt 226 2.21e+01 5ptp b.47.1.2 26300 1oshA 232 2.25e+01 1kxpD 458 2.28e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1xsm 390 2.29e+01 1xsm a.25.1.2 16804 1ezvD 245 2.31e+01 1be3D a.3.1.3 59546 f.23.11.1 59547 1u08A 386 2.42e+01 1nn6A 228 2.46e+01 b.47.1.2 85893 1h0oA 390 2.55e+01 a.25.1.2 70845 1izcA 339 2.65e+01 c.1.12.5 83838 1omrA 201 2.65e+01 1kyoD 248 2.74e+01 a.3.1.3 73254 f.23.11.1 73255 1dk8A 147 2.75e+01 1agrE a.91.1.1 18548 1uxtA 501 2.77e+01 1odoA 408 2.82e+01 1tu3F 79 2.86e+01 1mhyG 169 2.89e+01 1mtyG a.23.3.1 16518 1qq5A 253 2.91e+01 1qq5A c.108.1.1 43327 1guxB 152 2.91e+01 1guxB a.74.1.3 18389 1qq7A 253 2.98e+01 1qq5A c.108.1.1 43329 1ivhA 394 3.00e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1bed 181 3.04e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1kb9D 246 3.08e+01 a.3.1.3 77317 f.23.11.1 77318 1ljrA 244 3.16e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1rec 201 3.19e+01 1rec a.39.1.5 17326 1pjpA 226 3.22e+01 5ptp b.47.1.2 26301 1e2xA 243 3.45e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1j78A 458 3.47e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 4icb 76 3.47e+01 4icb a.39.1.1 17145 1w32A 348 3.48e+01 1go3F 107 3.51e+01 a.60.8.2 65407 1hw1A 239 3.52e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1vp4A 425 3.53e+01 1pvaA 110 3.53e+01 1a75A a.39.1.4 17207 1ouvA 273 3.55e+01 2ki5A 366 3.55e+01 1qhiA c.37.1.1 31862 1skyE 473 3.58e+01 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1e2kA 331 3.60e+01 1qhiA c.37.1.1 31854 1ixh 321 3.63e+01 1ixh c.94.1.1 35761 1qhiA 366 3.65e+01 1qhiA c.37.1.1 31860 1r85A 379 3.66e+01 1iqqA 200 3.66e+01 d.124.1.1 66274 1hizA 379 3.66e+01 c.1.8.3 65841 2tct 207 3.67e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1be3A 446 3.73e+01 1be3A d.185.1.1 58950 d.185.1.1 58951 1euhA 475 3.78e+01 1euhA c.82.1.1 35369 1kimA 366 3.87e+01 1qhiA c.37.1.1 31864 1qoyA 318 3.92e+01 1qoyA h.4.4.1 45788 1bjz 207 3.92e+01 2tct a.4.1.9 16065 a.121.1.1 19242 1eceA 358 3.93e+01 1eceA c.1.8.3 28813