# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l5zA 155 3.78e-01 c.23.1.1 77722 1qkkA 155 4.10e-01 1dbwA c.23.1.1 31104 1o4sA 389 5.34e-01 c.67.1.1 86620 1qusA 322 1.13e+00 1ltm d.2.1.6 36991 1lwdA 413 1.13e+00 c.77.1.1 78265 1peqA 714 1.30e+00 1v74B 87 1.33e+00 1paqA 189 1.37e+00 1ltm 320 1.42e+00 1ltm d.2.1.6 36992 1n45A 233 1.57e+00 a.132.1.1 79981 1w0hA 204 1.69e+00 1eemA 241 1.98e+00 1eemA a.45.1.1 17717 c.47.1.5 33011 1fftC 204 2.34e+00 1fftC f.25.1.1 43629 1m1cA 680 2.47e+00 e.42.1.1 78395 1h3fA 432 2.89e+00 c.26.1.1 76631 d.66.1.4 76632 1bed 181 3.51e+00 1fvkA a.44.1.1 17514 c.47.1.4 32808 1f7cA 231 3.58e+00 1f7cA a.116.1.1 19107 1qgjA 300 3.95e+00 1bgp a.93.1.1 18691 1lwyA 324 4.14e+00 a.96.1.3 78285 d.129.1.2 78286 1ko9A 345 4.17e+00 a.96.1.3 68717 d.129.1.2 68718 1k8eA 345 4.39e+00 1o17A 345 4.39e+00 a.46.2.1 80765 c.27.1.1 80766 1ebmA 317 4.53e+00 1ebmA a.96.1.3 18751 d.129.1.2 41300 1w68A 390 4.64e+00 1r85A 379 4.70e+00 1s9pA 227 4.81e+00 1rtwA 220 4.85e+00 1hizA 379 5.02e+00 c.1.8.3 65841 1pv6A 417 6.07e+00 1oshA 232 6.28e+00 1tqgA 105 6.43e+00 1i37A 260 6.99e+00 1a28A a.123.1.1 61583 1rtxA 123 7.08e+00 1xsm 390 7.21e+00 1xsm a.25.1.2 16804 1a05A 358 7.73e+00 1cnzA c.77.1.1 35059 1cm7A 363 8.37e+00 1cnzA c.77.1.1 35063 1wmuA 141 8.61e+00 1mhyB 395 8.85e+00 1mtyB a.25.1.2 16781 1omrA 201 8.98e+00 1mroA 548 9.13e+00 1mroA a.89.1.1 18525 d.58.31.2 39443 1cqxA 403 9.21e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1rfzA 168 9.63e+00 1syyA 346 9.64e+00 1klt 226 9.67e+00 5ptp b.47.1.2 26300 1hbnA 549 1.00e+01 1mroA a.89.1.1 60898 d.58.31.2 60899 1izcA 339 1.03e+01 c.1.12.5 83838 1pu6A 218 1.03e+01 1t7rA 269 1.06e+01 1f5qB 252 1.06e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1iow 306 1.08e+01 1iow c.30.1.2 31713 d.142.1.1 41481 1iq3A 110 1.09e+01 1iq3A a.39.1.6 62640 1m3qA 317 1.11e+01 1qq8A 214 1.12e+01 1qq8A 1hlvA 131 1.12e+01 a.4.1.7 65854 a.4.1.7 65855 1jr7A 311 1.12e+01 b.82.2.3 63255 1guxB 152 1.15e+01 1guxB a.74.1.3 18389 1iqrA 420 1.16e+01 a.99.1.1 66275 c.28.1.1 66276 1ljrA 244 1.19e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1lnrI 134 1.23e+01 1n83A 270 1.24e+01 a.123.1.1 80276 1uxtA 501 1.26e+01 1r5qA 102 1.30e+01 1kgsA 225 1.31e+01 a.4.6.1 68596 c.23.1.1 68597 1qcrA 446 1.31e+01 1be3A d.185.1.1 59025 d.185.1.1 59026 1qqfA 277 1.33e+01 1c3d a.102.4.4 18875 1fonA 240 1.33e+01 5ptp b.47.1.2 26231 1j30A 144 1.39e+01 1go3F 107 1.43e+01 a.60.8.2 65407 1ka2A 499 1.44e+01 d.92.1.5 77305 1ash 150 1.46e+01 1ash a.1.1.2 15622 1j4nA 271 1.51e+01 f.19.1.1 71510 1mijA 152 1.53e+01 a.4.1.1 79150 1colA 204 1.55e+01 1a87 f.1.1.1 43378 1otkA 249 1.55e+01 1om2A 95 1.61e+01 1om2A a.23.4.1 16520 2dln 306 1.62e+01 1iow c.30.1.2 31715 d.142.1.1 41483 1htjF 210 1.77e+01 1htjF a.91.1.1 61254 1cnzA 363 1.80e+01 1cnzA c.77.1.1 35061 1eh2 106 1.80e+01 1eh2 a.39.1.6 17339 1hw1A 239 1.81e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1d0bA 213 1.82e+01 1d0bA c.10.2.1 30866 1uddA 226 1.88e+01 1a4pA 96 1.89e+01 1b4cA a.39.1.2 17176 1iv8A 720 1.96e+01 b.71.1.1 76842 c.1.8.1 76843 1ouvA 273 1.97e+01 1kfuS 184 1.98e+01 a.39.1.8 68574 1w7bA 339 1.99e+01 1vg0A 650 2.02e+01 2tct 207 2.02e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1ku1A 230 2.08e+01 a.118.3.1 72996 1ng1 294 2.10e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1mhyG 169 2.10e+01 1mtyG a.23.3.1 16518 1e96B 203 2.10e+01 1e96B a.118.8.1 19211 4ubpA 101 2.10e+01 1ubpA d.8.1.1 37352 1ax4A 467 2.11e+01 1ax4A c.67.1.2 34391 1hh8A 213 2.13e+01 1e96B a.118.8.1 61042 1m9sA 605 2.15e+01 b.1.18.15 78874 b.34.11.1 78875 b.34.11.1 78876 b.34.11.1 78877 c.10.2.1 78878 1twfF 155 2.17e+01 1mlwA 301 2.18e+01 d.178.1.1 79289 1ihoA 283 2.20e+01 1ihoA c.26.1.4 62390 1i50F 155 2.21e+01 d.78.1.2 61760 2lhb 149 2.21e+01 2fal a.1.1.2 15597 1myt 146 2.21e+01 1a6m a.1.1.2 15207 1fz1C 389 2.27e+01 1mtyB a.25.1.2 16746 1h67A 108 2.32e+01 a.40.1.1 65643 1w53A 84 2.34e+01 1kxpD 458 2.37e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1o0sA 605 2.39e+01 c.2.1.7 86540 c.58.1.3 86541 1h0oA 390 2.39e+01 a.25.1.2 70845 1pf5A 131 2.43e+01 1qk3A 233 2.43e+01 1qk3A c.61.1.1 34031 1clxA 347 2.50e+01 1taxA c.1.8.3 28899 1s2xA 206 2.50e+01 1vp4A 425 2.50e+01 1be3A 446 2.53e+01 1be3A d.185.1.1 58950 d.185.1.1 58951 1jpnA 296 2.58e+01 a.24.13.1 67039 c.37.1.10 67040 3sdhA 146 2.59e+01 3sdhA a.1.1.2 14984 1ib2A 349 2.61e+01 1ib2A a.118.1.8 62141 1ls1A 295 2.63e+01 a.24.13.1 78170 c.37.1.10 78171 7catA 506 2.68e+01 1cf9A e.5.1.1 42781 1t3wA 148 2.69e+01 1ubpA 101 2.74e+01 1ubpA d.8.1.1 37353 1b4aA 149 2.75e+01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1tu3F 79 2.76e+01 1ppjA 446 2.78e+01 1csn 298 2.80e+01 1csn d.144.1.7 41664 1w32A 348 2.80e+01 1or7A 194 2.82e+01 a.4.13.2 87332 a.177.1.1 87333 1o0wA 252 2.83e+01 a.149.1.1 80751 d.50.1.1 80752 2ng1 293 2.87e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 3icb 75 2.87e+01 4icb a.39.1.1 17147 1j8uA 325 2.88e+01 d.178.1.1 71611 1dseA 292 2.88e+01 1ryc a.93.1.1 59130 1pjpA 226 2.91e+01 5ptp b.47.1.2 26301 1kf6A 602 2.91e+01 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 1wkqA 164 2.97e+01 1vmaA 306 2.97e+01 1v4xA 144 3.01e+01 1ocyA 198 3.01e+01 d.231.1.1 86817 1rp3B 88 3.03e+01 1qo7A 394 3.04e+01 1qo7A c.69.1.11 34697 1l0lA 446 3.09e+01 d.185.1.1 84482 d.185.1.1 84483 1iqqA 200 3.14e+01 d.124.1.1 66274 1pah 308 3.19e+01 4pah d.178.1.1 42578 1fqvD 149 3.21e+01 1fqvD a.157.1.1 19263 d.42.1.1 38667 1yrnB 83 3.23e+01 1akhB a.4.1.1 15986 1vi0A 206 3.23e+01 1iuqA 367 3.23e+01 1j8mF 297 3.24e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1alvA 173 3.32e+01 1alvA a.39.1.8 17370 1f5sA 211 3.32e+01 1f5sA c.108.1.4 59656 1j97A 211 3.33e+01 1f5sA c.108.1.4 62753 1mtyB 384 3.33e+01 1mtyB a.25.1.2 16740 1dmwA 307 3.36e+01 4pah d.178.1.1 42580 1cipA 353 3.42e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1j78A 458 3.44e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 1f4qA 165 3.53e+01 1alvA a.39.1.8 17360 1am7A 158 3.53e+01 1am7A d.2.1.4 36981 1h99A 224 3.56e+01 a.142.1.1 60814 a.142.1.1 60815 1bncB 449 3.57e+01 1bncA b.84.2.1 28237 c.30.1.1 31644 d.142.1.2 41489 1dgsA 667 3.61e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1e2uA 553 3.64e+01 1e1dA e.26.1.1 43362 1je8A 82 3.65e+01 a.4.6.2 77108 1ryc 294 3.65e+01 1ryc a.93.1.1 18601 1jk0A 419 3.66e+01 a.25.1.2 63142 1cfr 285 3.67e+01 1cfr c.52.1.7 33312 1jilA 420 3.68e+01 c.26.1.1 66745 2cyp 294 3.71e+01 1ryc a.93.1.1 18600 1mmoB 384 3.71e+01 1mtyB a.25.1.2 16768 4pah 308 3.71e+01 4pah d.178.1.1 42576 2occA 514 3.71e+01 2occA f.24.1.1 43518 1t07A 94 3.71e+01 1gntA 553 3.72e+01 e.26.1.1 70290 1np8A 159 3.74e+01 1fqvJ 149 3.74e+01 1fqvD a.157.1.1 19266 d.42.1.1 38670 1fi2A 201 3.78e+01 1fi2A b.82.1.2 59845 1ezvD 245 3.79e+01 1be3D a.3.1.3 59546 f.23.11.1 59547 1pvaA 110 3.79e+01 1a75A a.39.1.4 17207 1l7mA 211 3.80e+01 c.108.1.4 73664 1tiyA 164 3.80e+01 1ds4A 292 3.80e+01 1ryc a.93.1.1 59129 1jgsA 138 3.82e+01 a.4.5.28 66683 1kyoD 248 3.88e+01 a.3.1.3 73254 f.23.11.1 73255 1l2iA 261 3.91e+01 a.123.1.1 73503 1qmhA 347 3.92e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1uujA 88 3.92e+01 1huw 166 3.96e+01 1huw a.26.1.1 16831 1aisA 182 3.97e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1dn1A 594 3.98e+01 1dn1A e.25.1.1 43357