# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ddt 535 7.07e-01 1ddt b.2.1.1 22379 d.166.1.1 42241 f.1.2.1 43384 1dfnA 30 2.29e+00 g.9.1.1 44570 1f0lA 535 2.50e+00 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1irk 306 4.76e+00 1fmk d.144.1.2 41703 1jenA 267 5.35e+00 1jenA 1iqaA 160 5.40e+00 1eaiC 61 5.75e+00 1eaiC g.22.1.1 44894 1i2hA 168 5.83e+00 1j6nA 303 6.08e+00 1slvA 142 6.62e+00 1sluA b.16.1.1 23688 1je5A 206 7.75e+00 1je5A b.40.4.7 62909 1qppA 218 7.95e+00 1qpxA b.1.11.1 22320 b.7.2.1 23202 1mak 113 8.52e+00 8fabA b.1.1.1 19825 1ddwA 120 8.60e+00 1evhA b.55.1.4 27001 1sluA 142 9.09e+00 1sluA b.16.1.1 23685 1b9wA 89 9.36e+00 1b9wA g.3.11.4 44334 g.3.11.4 44335 1ir3A 306 9.67e+00 1fmk d.144.1.2 41702 1ihgA 370 9.74e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1jpaA 312 1.10e+01 d.144.1.2 67011 1nglA 179 1.40e+01 1nglA b.60.1.1 27146 1sva1 361 1.46e+01 1vpsA 1ddvA 111 1.53e+01 1evhA b.55.1.4 27002 1g0sA 209 1.58e+01 1g0sA d.113.1.1 60187 1icfA 175 1.67e+01 1cs8A d.3.1.1 37067 1jroB 777 1.80e+01 d.41.1.1 67141 d.133.1.1 67142 1fthA 122 1.99e+01 d.150.1.2 60028 1a1z 91 2.15e+01 1a1z a.77.1.1 18427 1pdgC 109 2.21e+01 1pdgA g.17.1.1 44750 1b65A 375 2.32e+01 1b65A d.154.1.1 42020 1cz3A 168 2.71e+01 1d1gA c.71.1.1 34891 1am2 199 2.77e+01 1am2 b.86.1.2 28381 1d2oA 187 2.77e+01 1d2oA b.3.5.1 22625 b.3.5.1 22626 1a1w 91 2.83e+01 1a1z a.77.1.1 18425 1lba 146 2.91e+01 1lba d.118.1.1 41062 1ib8A 164 2.94e+01 1cs8A 316 3.02e+01 1cs8A d.3.1.1 37065 1bbt3 220 3.09e+01 1qqp3 1pdgA 109 3.09e+01 1pdgA g.17.1.1 44748 1d2pA 373 3.16e+01 1d2oA b.3.5.1 22629 b.3.5.1 22630 b.3.5.1 22631 b.3.5.1 22632 1qqp3 220 3.38e+01 1qqp3 1a3lL 217 3.41e+01 8fabA b.1.1.1 20240 b.1.1.2 21252 1dokA 77 3.42e+01 1dokA d.9.1.1 37420 1dfaA 454 3.43e+01 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 1bj7 156 3.44e+01 1bj7 b.60.1.1 27113 1xbrA 184 3.57e+01 1xbrA b.2.5.1 22458 1d1gA 168 3.71e+01 1d1gA c.71.1.1 34889 1dlfL 113 3.74e+01 8fabA b.1.1.1 20382 1al0G 175 3.76e+01 2bpa2 b.10.1.1 23275 1qmeA 702 3.81e+01 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1eagA 342 3.90e+01 1eagA b.50.1.2 26826 1jb9A 316 3.93e+01 1fnc b.43.4.2 62840 c.25.1.1 62841